Basic Information

Insect: Lydus trimaculatus
Gene Symbol: -
Assembly: GCA_037414755.1
Location: JAZBGY010002757.1:2338-7573[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.0042 0.24 11.6 1.9 1 23 12 34 12 34 0.91

2 26 7.3e-05 0.0041 17.2 3.6 1 23 40 63 40 63 0.98

3 26 0.00041 0.023 14.8 2.7 1 23 75 98 75 98 0.93

4 26 0.0051 0.29 11.4 3.0 3 23 109 129 108 129 0.98

5 26 5e-07 2.8e-05 24.0 0.8 1 23 135 157 135 157 0.98

6 26 7.5e-06 0.00042 20.3 0.7 1 23 163 185 163 185 0.98

7 26 0.012 0.65 10.3 0.1 1 18 191 208 191 208 0.95

8 26 0.57 32 4.9 1.8 3 23 213 233 212 233 0.95

9 26 0.0015 0.087 13.0 0.2 3 23 263 283 261 283 0.96

10 26 0.00019 0.011 15.9 0.1 1 23 288 310 288 310 0.97

11 26 0.015 0.82 9.9 3.0 2 23 317 338 316 338 0.97

12 26 7.1e-05 0.004 17.2 0.9 1 23 344 366 344 366 0.98

13 26 7.7e-05 0.0044 17.1 3.3 1 23 372 395 372 395 0.94

14 26 9.2e-06 0.00052 20.0 2.5 1 23 406 429 406 429 0.97

15 26 9 5.1e+02 1.2 0.0 2 13 438 449 437 451 0.79

16 26 0.021 1.2 9.5 0.6 1 23 481 504 481 504 0.96

17 26 0.012 0.67 10.2 1.1 1 23 527 550 527 550 0.96

18 26 4.8 2.7e+02 2.0 5.1 1 21 554 574 554 576 0.82

19 26 0.82 46 4.4 6.5 1 23 582 605 582 605 0.96

20 26 0.054 3 8.2 0.9 1 14 611 624 611 633 0.83

21 26 0.0045 0.25 11.5 1.2 1 23 639 662 639 662 0.94

22 26 4.5e-05 0.0025 17.8 0.8 2 23 674 696 673 696 0.97

23 26 4e-05 0.0023 18.0 1.7 3 23 709 729 707 729 0.96

24 26 1.4e-06 8.1e-05 22.5 1.1 1 23 735 757 735 757 0.99

25 26 2e-06 0.00011 22.1 1.9 1 23 763 785 763 785 0.98

26 26 0.0032 0.18 12.0 0.1 1 21 791 811 791 812 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.0042	0.24	11.6	1.9	1	23	12	34	12	34	0.91
2	26	7.3e-05	0.0041	17.2	3.6	1	23	40	63	40	63	0.98
3	26	0.00041	0.023	14.8	2.7	1	23	75	98	75	98	0.93
4	26	0.0051	0.29	11.4	3.0	3	23	109	129	108	129	0.98
5	26	5e-07	2.8e-05	24.0	0.8	1	23	135	157	135	157	0.98
6	26	7.5e-06	0.00042	20.3	0.7	1	23	163	185	163	185	0.98
7	26	0.012	0.65	10.3	0.1	1	18	191	208	191	208	0.95
8	26	0.57	32	4.9	1.8	3	23	213	233	212	233	0.95
9	26	0.0015	0.087	13.0	0.2	3	23	263	283	261	283	0.96
10	26	0.00019	0.011	15.9	0.1	1	23	288	310	288	310	0.97
11	26	0.015	0.82	9.9	3.0	2	23	317	338	316	338	0.97
12	26	7.1e-05	0.004	17.2	0.9	1	23	344	366	344	366	0.98
13	26	7.7e-05	0.0044	17.1	3.3	1	23	372	395	372	395	0.94
14	26	9.2e-06	0.00052	20.0	2.5	1	23	406	429	406	429	0.97
15	26	9	5.1e+02	1.2	0.0	2	13	438	449	437	451	0.79
16	26	0.021	1.2	9.5	0.6	1	23	481	504	481	504	0.96
17	26	0.012	0.67	10.2	1.1	1	23	527	550	527	550	0.96
18	26	4.8	2.7e+02	2.0	5.1	1	21	554	574	554	576	0.82
19	26	0.82	46	4.4	6.5	1	23	582	605	582	605	0.96
20	26	0.054	3	8.2	0.9	1	14	611	624	611	633	0.83
21	26	0.0045	0.25	11.5	1.2	1	23	639	662	639	662	0.94
22	26	4.5e-05	0.0025	17.8	0.8	2	23	674	696	673	696	0.97
23	26	4e-05	0.0023	18.0	1.7	3	23	709	729	707	729	0.96
24	26	1.4e-06	8.1e-05	22.5	1.1	1	23	735	757	735	757	0.99
25	26	2e-06	0.00011	22.1	1.9	1	23	763	785	763	785	0.98
26	26	0.0032	0.18	12.0	0.1	1	21	791	811	791	812	0.95

Sequence Information

Coding Sequence: ATGCATATTAAAGCCCATGAAGGTACAACGAAATATAAATGTGAGATATGTCAGAAAGCTTTTACTGTTAGTACACATGCAATCGaacataaatatttccatACTGGTGAGAAACCGTTCCAATGTGAAATTTGTGGTAAACATTTCATGTTTTCATGGTTTCTAACATCACATCGACGTACCCAACATTGGGAAATAATGACTGGTACACCGTTAGTTAAATACGATTGTCAAATATGTAATAAACATTATACATCATCAACTGGTCTACGTCGACATAATATCAGTAAACATAATGCTACAGGTGGTGATGTTTCTGTATTATGTGATATCTGTGGCAAATGTCTTTCTAGTAAAGAGAAATTGAAATTCCATCGACGTATCCATACCGGTTATAAACCGTTCAGTTGTATGATTTGTCCGAAGAGTTTTTCAAGGAAAGAACAATTAAAGGAACACGAACGTATACATACGGGAGAGAAACCgtttatttgtagattttgCGGTAAAGGATTTTCACAACGATCACCATTACGTATCCATGAAAGGACGCATACAGGCGAACGACCATATACTTGTCTTGTTTGTGGTAAAGGCTATATTTCGAAAGATGCACTCAAGAAAAAAGATACATTATGTGAACTTTGTGGCAACAGATATGATCCAAATTACCTTTGTAAACATCGTACAAAAGTCCATGAGAAACATTTTATTCTATGTCACCACTGTGGTGATTTGGTTCGTAAAGAATCATTCAACAATCATGAGAAAATCCATGGTATTTGTTGTGAAATATGTCCAGCAATATTTAACACAATCGATGAATTGACTGAACATACGAAAATTCATATCAAGACAATATATGAATGTGAAAAGTGTCCTTTAACATTTCCAACACCATTTCAATTAGTTTTACATAATCGTGAACATAACGGTTTAGCAACATTACAATGTTATAAATGTCAATTTTCAACAAGGAAACTGTCATCAATGAGAGAACATTTACGTCGACATGAAGATCGTTATAATTACGTTTGTGATGTTTGTTCGAAacgtttttataaaagaatccAATTGAATGCACACAAACAAATCCATGAGACAATTCCGAAATATATAtgtgaattttgtaataaacgatTCACATCACAacgttatttaaataatcaccGTATGTTCAATCATTCCAAAGAATTAACCGGTACTGAAACTACATATATGTGTAAACACTGTGGACGTGGTTTCAAATTTGAAGTGAGTTTAAAACGACATTTAAGCACAATACATAATATTGGGGAATGTCGAAAAGTGCCCTGTCCACTTTGCAATAAAATCATAGCTAATCGGTCGAAAACGTTTGGAAAACGTGAAAAAATGGAAGATTCAGATGATGAATATCAACCAccgaacaaacaaaaatcaggAAAATCATTACGTACCTATACTTGTCGAAAATGTTTAATAGAATTCCCTCaaagaaaattgttagaagatcacaacaaaatcaatcacCAGAAAGATGGTAGCGCCAGTGATGTTAATACAACTCATTTCAAATATGATGAAAAACAGGAGGTCtacatttgtaatatttgttcagCTGAATTTCAGGATAAATCAGAGACACAACAACATTTCAAAAAGAACCATTTAGATCGTTTTTGTTGTGATCAATGTAATATTACATTTGATAATGCTTATGCGTTTAGCTGTCATAATCAGCAACATAACACTGATCAGCTATTTTGCTGTCCATTTTGTTCATATTCAACGAAACGTAGAACTTGTATTTTAACACATATTAATCGAATGCATTACCACAAATTCtactattattgtaaaacttgCGGCAAAGGTTTCaatgatttaacaattttcaaagaaCATGATAACGAACATTTAGGTATAAAACCGTTCGTTTGTGTTGTTTGTGACAAATCATTTGTATTTTCACGTTATTTGAATTTCCATCAAATCCGTTATCATACTGTTAGTATTGAAGGGCAAATCAAAGAGAATCAATGTCCTATATGTTTAAAGAGTTttgcaaaacaaacaacattagtTAAACATTTATCAACGCGACATTCAAAATCTGATGGTCCACGTGAGCGACGACATTTATGCGATGTATGTGGTAAACGATTCGCCACAAAAGATAAATATAGTATCCATTATAGAATACATACCGGTGTTAAACCGTATACATGTAAATATTGTCcgaaaagttttattaaaaaggaTTATCTAATTATGCATGAACGTGTTCATACTGGTGAGAAACCATATTCGTGTCAACATTGTGGTAAATGTTTTAATCAAGCAGCACCATTACGGATTCATATTCGTGGACATACCGGTGAACGTCCgtatgtttgtaatttttgcaaTGCTGGATTCACATCGAAAGGTGCTTTAGATATACATAGAAAAGTCTGTACGGGATCTGTCAGTTAA
Protein Sequence: MHIKAHEGTTKYKCEICQKAFTVSTHAIEHKYFHTGEKPFQCEICGKHFMFSWFLTSHRRTQHWEIMTGTPLVKYDCQICNKHYTSSTGLRRHNISKHNATGGDVSVLCDICGKCLSSKEKLKFHRRIHTGYKPFSCMICPKSFSRKEQLKEHERIHTGEKPFICRFCGKGFSQRSPLRIHERTHTGERPYTCLVCGKGYISKDALKKKDTLCELCGNRYDPNYLCKHRTKVHEKHFILCHHCGDLVRKESFNNHEKIHGICCEICPAIFNTIDELTEHTKIHIKTIYECEKCPLTFPTPFQLVLHNREHNGLATLQCYKCQFSTRKLSSMREHLRRHEDRYNYVCDVCSKRFYKRIQLNAHKQIHETIPKYICEFCNKRFTSQRYLNNHRMFNHSKELTGTETTYMCKHCGRGFKFEVSLKRHLSTIHNIGECRKVPCPLCNKIIANRSKTFGKREKMEDSDDEYQPPNKQKSGKSLRTYTCRKCLIEFPQRKLLEDHNKINHQKDGSASDVNTTHFKYDEKQEVYICNICSAEFQDKSETQQHFKKNHLDRFCCDQCNITFDNAYAFSCHNQQHNTDQLFCCPFCSYSTKRRTCILTHINRMHYHKFYYYCKTCGKGFNDLTIFKEHDNEHLGIKPFVCVVCDKSFVFSRYLNFHQIRYHTVSIEGQIKENQCPICLKSFAKQTTLVKHLSTRHSKSDGPRERRHLCDVCGKRFATKDKYSIHYRIHTGVKPYTCKYCPKSFIKKDYLIMHERVHTGEKPYSCQHCGKCFNQAAPLRIHIRGHTGERPYVCNFCNAGFTSKGALDIHRKVCTGSVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -