Ltri000805.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lydus trimaculatus
Gene Symbol
-
Assembly
GCA_037414755.1
Location
JAZBGY010000060.1:129-3709[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0052 0.29 11.4 4.6 1 23 153 175 153 175 0.98
2 16 0.00088 0.05 13.8 7.7 2 23 182 203 182 203 0.98
3 16 6.5e-05 0.0036 17.3 2.2 1 23 214 236 214 236 0.97
4 16 0.0011 0.06 13.5 1.5 1 23 301 323 301 323 0.99
5 16 1.9e-05 0.0011 19.0 7.5 2 23 330 351 329 351 0.97
6 16 0.00019 0.011 15.8 4.4 2 23 368 390 367 390 0.96
7 16 0.00015 0.0084 16.2 4.5 1 23 487 509 487 509 0.96
8 16 8.5e-05 0.0048 17.0 0.7 1 23 515 538 515 538 0.94
9 16 7.6e-07 4.3e-05 23.4 0.9 1 23 543 565 543 565 0.98
10 16 1.7e-07 9.4e-06 25.5 1.7 2 23 576 597 575 597 0.97
11 16 6e-08 3.4e-06 26.9 1.5 1 23 604 626 604 626 0.97
12 16 2.3e-05 0.0013 18.8 1.6 3 23 638 658 636 658 0.92
13 16 0.00014 0.0081 16.3 5.1 1 23 664 686 664 686 0.99
14 16 1.6e-05 0.0009 19.3 4.2 1 23 692 714 692 714 0.98
15 16 5.8e-08 3.3e-06 26.9 0.2 1 23 720 742 720 742 0.99
16 16 0.00019 0.011 15.9 0.1 1 23 748 772 748 772 0.92

Sequence Information

Coding Sequence
atGATTAATAAACCATCAACAGAATTAGTGATTGATAAAATATGTCGTTCATGTATGTGTCAAGATGATAATATGCGAAATGTATTCGAATCAAAAGAATTTTGTGgacaaacattacaaattgctgaaattttaatggattGTGCATCAATTAATgTAACAAATACGGATGGTTTACCGAAATTATTATGCggaaattgtgaaaataaattgaatttagttTATGAATTTCGTAAACAATGCCAAAATTCTGATTTAACATTACgtcaattaacaaatcaacaagACAATTCTGTACAGGAAATTAAAGAGGAAAGTCTTGATATTGTTGTACATCCCGATTTTAATCTACCAACATTATTTCAgggATCTGATAGTGAGAACGAGGtaggtggtgatgatgatgatgatgatgatgatagtattaaaaatacaaaaacaaaacaaaaaccaatatttACATGtcaattttgtcaaaaaattcTACATACAAAAAAAGGTTTACGTATACATCAACGTCGTCATACTGGTGATAGATTACGACAATGTCATATGTGTAATGCCCAATTTACACGTACCCATCATTTAATAAGACATATGAAATTGCATTGTAAAAAAACTAAATCAGATACATCAGGACATGTATGTAGTGAATGTGGTCAAAcatttatgaaattatcaaatttattatcacataaaaaaatgcataaatcatcaacatcatcgacaatacaacaagaacaacaatcaacaacttcaacaattgttggcaatacaaatgataatatttctactgataataatgttgaaggtgttggtgataatggtggtggtggtggtgataatttcgatgaattctttaaaatgaaaccaaaaaatacaaaaaaagataaagGTACATAtgaatgtaaatattgttttaaaataatgacaacatttgttggtttaaaaatacatatgaGACGGCATACAGGTGCTGATTTATCTGAATGTAAATTATGTCAtaaaagttttacaaaaacaagtcATTTAAAACGACATTTACAAACACATGgtattaaagaaattgataaaccaAAAccaattgaaaagaaaataatggAATGTGAATTTTGTGAtcgtaaatttaaatataaaaaatcatttaatcaTCATATGCAATCTGAACATGGTATGTCTGATGAAAGTGATGTACCATTAAGTGCatatatatcaaaaaataatgataataataaaaataatgatattaaaaatgaagataataatgttgatgatgaagtTGCAACTTCAACACAACAAGATGAATCACTACAACCGTCTGATAGAGAAATTAAAGTCAATGTTGATGaatctactactactactgccactactactaccactactactactactactactactagtagtagtagtagtgtgcCCCAACAAATTCCAAAGACTGGTAATCATAAAATCCATTCGTGTCATGTGTGTGATGCACAATTTGTACGTGCAAATCATTTAACACGTCATATGACATTACATCGTGCTGTATTAATACATAAATGTGATCGTTGTGATAAAGCATATGCAACAttagaatatttaacaaaacatattGAAGAAGACCATATAAATAAACCATATGTATGTACAATATGTAATAAACCATTTAGTAGAGGTGAACATTTAATACGTCATTTGAAAATacatcaaacaaataatgataaaaatgataatttaacatGTTCAATATGTGAAAAAACATTTACAAGATCTGATCATTTAGCACGTCatattaaaatacatttattacaaGATAAACGACATATATGTAATGATTGTGGTAAAGCATTTAATCgtttagataatttaaaaacacatCAACGTATACATACTGGCATTAaagatacaacaaaattacatttatgCATTTATTGTGGtaaagaatttaataattccaGTAATATGattgtCCATATGAGACGACATACAGGCGAACGTCCATACAAATGTAACCAATGCGGTAAAGGTTTTCCACGATCACACGATTTAAAATGTCACGAACGTACACATTCTGGTGAGAAACCATATCATTGTACATTATGTGgtaaatcattcaataaaagtaataaattgTTGAGACATACACGTGTCCATACTGGTGAACGTCCATATGTTTGTAATATATGCGGTCGTGCTTTCACCCAATCAAATGATTTAGCTTTACATATGCGTCGTCATACTGGTGCACGTCCATATGCATGTGGTATGTGTCCAGCACGTTTTATACAATCTGGTCAATTGAAAGCGCATCGTCGTTCAACTGGTCATTGGATGGAAACACAACCAGATTTAAAAGGTGGTCATCGTGTTGAACCAGTTACACCAGTTTTAGAACCAACACCAATACGTTTTAAAACACATggtaaacaaaagaaacacgatattgatgatgatgatgataataatgaaagtataattattaataataatgatgatgatgatgaagaagatagaaaaaatacaaaattattaaatcaaacaatgaaTATAATGAGTGGTATTAATTTACAAGGACAATCAATTATGATGGATGCAACGAAATTagttgaattacaaaatactggttttattaatttaattaatacaactGTTGCTGGGACAAGTGGTAATAgtgttttaaaatataaaacaatagataatAGTGGACAATATAATGTGAGTggacaaattgttaaaactgAAGAAAGTGTTAAAGGATTAGATGATGTTAATAAAGTtgttgcaacaacaacaacaacaacaacatcatcaataacGAATTATCCAAAAGATACAGCAACTGTTACATATTCAATTGTtgcaccaccaacaacaacaacattcacaACAACTGATTATAGTTATCAGAATTatggttaa
Protein Sequence
MINKPSTELVIDKICRSCMCQDDNMRNVFESKEFCGQTLQIAEILMDCASINVTNTDGLPKLLCGNCENKLNLVYEFRKQCQNSDLTLRQLTNQQDNSVQEIKEESLDIVVHPDFNLPTLFQGSDSENEVGGDDDDDDDDSIKNTKTKQKPIFTCQFCQKILHTKKGLRIHQRRHTGDRLRQCHMCNAQFTRTHHLIRHMKLHCKKTKSDTSGHVCSECGQTFMKLSNLLSHKKMHKSSTSSTIQQEQQSTTSTIVGNTNDNISTDNNVEGVGDNGGGGGDNFDEFFKMKPKNTKKDKGTYECKYCFKIMTTFVGLKIHMRRHTGADLSECKLCHKSFTKTSHLKRHLQTHGIKEIDKPKPIEKKIMECEFCDRKFKYKKSFNHHMQSEHGMSDESDVPLSAYISKNNDNNKNNDIKNEDNNVDDEVATSTQQDESLQPSDREIKVNVDESTTTTATTTTTTTTTTTTSSSSSVPQQIPKTGNHKIHSCHVCDAQFVRANHLTRHMTLHRAVLIHKCDRCDKAYATLEYLTKHIEEDHINKPYVCTICNKPFSRGEHLIRHLKIHQTNNDKNDNLTCSICEKTFTRSDHLARHIKIHLLQDKRHICNDCGKAFNRLDNLKTHQRIHTGIKDTTKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCNQCGKGFPRSHDLKCHERTHSGEKPYHCTLCGKSFNKSNKLLRHTRVHTGERPYVCNICGRAFTQSNDLALHMRRHTGARPYACGMCPARFIQSGQLKAHRRSTGHWMETQPDLKGGHRVEPVTPVLEPTPIRFKTHGKQKKHDIDDDDDNNESIIINNNDDDDEEDRKNTKLLNQTMNIMSGINLQGQSIMMDATKLVELQNTGFINLINTTVAGTSGNSVLKYKTIDNSGQYNVSGQIVKTEESVKGLDDVNKVVATTTTTTTSSITNYPKDTATVTYSIVAPPTTTTFTTTDYSYQNYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00987297;
90% Identity
-
80% Identity
-