Basic Information

Insect: Lydus trimaculatus
Gene Symbol: -
Assembly: GCA_037414755.1
Location: JAZBGY010000838.1:21374-24312[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00023 0.013 15.6 1.4 1 23 2 24 2 24 0.99

2 20 0.00072 0.041 14.0 2.6 1 23 30 53 30 53 0.94

3 20 1.1e-05 0.00061 19.8 2.4 3 23 59 79 58 79 0.99

4 20 2.5e-05 0.0014 18.6 4.8 1 23 89 112 89 112 0.98

5 20 0.025 1.4 9.2 0.1 1 23 119 141 119 141 0.93

6 20 1e-07 5.9e-06 26.1 1.8 2 23 148 169 148 169 0.98

7 20 3.1e-06 0.00017 21.5 5.8 1 23 175 197 175 197 0.98

8 20 0.21 12 6.3 0.4 1 23 203 228 203 228 0.94

9 20 5.3e-06 0.0003 20.8 3.7 2 23 235 256 234 256 0.98

10 20 8.1e-07 4.6e-05 23.3 1.5 1 23 262 284 262 284 0.98

11 20 0.00057 0.032 14.4 0.3 2 23 291 312 290 312 0.97

12 20 0.016 0.87 9.9 0.6 1 21 318 338 318 339 0.95

13 20 2.3e-07 1.3e-05 25.0 2.7 1 23 343 365 343 365 0.99

14 20 0.00022 0.012 15.7 0.5 1 23 369 392 369 392 0.97

15 20 7.4e-06 0.00042 20.3 0.5 3 23 402 422 401 422 0.99

16 20 0.00015 0.0086 16.2 0.4 1 23 432 455 432 455 0.97

17 20 0.0048 0.27 11.5 1.4 1 23 462 484 462 484 0.97

18 20 1.4e-07 7.7e-06 25.8 0.6 2 23 491 512 491 512 0.97

19 20 5.6e-07 3.2e-05 23.8 2.9 1 23 518 540 518 540 0.98

20 20 0.015 0.84 9.9 1.3 1 23 546 569 546 569 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00023	0.013	15.6	1.4	1	23	2	24	2	24	0.99
2	20	0.00072	0.041	14.0	2.6	1	23	30	53	30	53	0.94
3	20	1.1e-05	0.00061	19.8	2.4	3	23	59	79	58	79	0.99
4	20	2.5e-05	0.0014	18.6	4.8	1	23	89	112	89	112	0.98
5	20	0.025	1.4	9.2	0.1	1	23	119	141	119	141	0.93
6	20	1e-07	5.9e-06	26.1	1.8	2	23	148	169	148	169	0.98
7	20	3.1e-06	0.00017	21.5	5.8	1	23	175	197	175	197	0.98
8	20	0.21	12	6.3	0.4	1	23	203	228	203	228	0.94
9	20	5.3e-06	0.0003	20.8	3.7	2	23	235	256	234	256	0.98
10	20	8.1e-07	4.6e-05	23.3	1.5	1	23	262	284	262	284	0.98
11	20	0.00057	0.032	14.4	0.3	2	23	291	312	290	312	0.97
12	20	0.016	0.87	9.9	0.6	1	21	318	338	318	339	0.95
13	20	2.3e-07	1.3e-05	25.0	2.7	1	23	343	365	343	365	0.99
14	20	0.00022	0.012	15.7	0.5	1	23	369	392	369	392	0.97
15	20	7.4e-06	0.00042	20.3	0.5	3	23	402	422	401	422	0.99
16	20	0.00015	0.0086	16.2	0.4	1	23	432	455	432	455	0.97
17	20	0.0048	0.27	11.5	1.4	1	23	462	484	462	484	0.97
18	20	1.4e-07	7.7e-06	25.8	0.6	2	23	491	512	491	512	0.97
19	20	5.6e-07	3.2e-05	23.8	2.9	1	23	518	540	518	540	0.98
20	20	0.015	0.84	9.9	1.3	1	23	546	569	546	569	0.96

Sequence Information

Coding Sequence: ATGTACGAATGTGATATTTGCcagaagaaaatcaaattttatggtaatttaatGTTGCACCGGCGGCGACATTTAAAAGATTACATGTTCAGTTGTGAGATATGTGGACAAGGTTTTATACAACATTGTGAATATAAAAGCCATATGGAAGGTAAACATAACAAATCGAATCTTTGTAATATATGCGGTCGATCATTCTATAATAAACATGGATTAGATTCACATATGAAACGGCATGATGAAGATTATACTGGTAAAcgtaattttaaatgtgaatattgTACGAAATCTTTTATGCAAATGATGCATTTGAAGAAACATATTAATCGTATGCATAATGTTAATCGCAGGAAATTCGTATGTGATTTATGTGGACAAGAATTGGCTAGTCGTGGTGGTTTACGTTATCACAAATATGCACATGAAGGTGTTAAAGAGAATGAATGTAAATTGTGTGGTAAGAAATTTAATCGTAAAAGTACATTAGTTGAACATATGCGTACACATTCCGGTGAGAAAccatattgttgtaaattttgtaataaatcattttcacAACGTTCCTCATTGACGATACATTTACGACAACATACAGGCGAGAAACCGTACACTTGTAATGTGTGTCAggataattttattaAATTGGCAAGTAAGTATGGTTTAACGATACATAAAAGAATCCATCAAggtttaaagaaaaatcaatgtaCAATATGTGGTAAGAAATTTGTACGATTTTGTACGTTGAAGGAACATATTCGAACACATACCGGTGAGAAACCGTATCATTGTGAAATTTGTGGTAGATCATTTTCACAAAAGACACCATTAAAAGTACATTTAAGATTGCATACAGTCAAAGAATCAGTACAATGTCTATATTGTCCACAAGTCTATAATAACAGACAGCGTTTAGAACGGCATTTAGTGACACATCCTGAATATCGACCGTATTCCTGTAAAATTTGTGCTGAAacatttaaatggaaaaattcatTAGAAATCCATCAGTGTATCTACGATAAATACAAATGTGATATATGTGAGAAAACATTTagtaattcatttaatttagaatATCATCGTCGACGTCATATGAAGAATTACAGTTGTGAAAATTGCGAACAAGTCTTTGTAACagataatgaattaaaacaacatacaaATAAAGAACATAAAACAATGAATCTAATCTCGACATTGTGTGAAGTTTGTGGTAAACCATTTTATGATCGTCGTACTTTAGAATATCACATGAAAAGGCATGAGAGTTTCGCTCAAATGCAAAACAATTTCCCATGTGAAATATGCAATAAGATTTTTTTACGTAAAgcgaatttattacaacataataAAACTGTACATAATGATAATCGACGGAAATTTGTTTGTGATTTATGTGGTAAAGTTGTGGCGACTTATCATACATTACAATTCCATAAAAATACACATGAAGGTATCAAAATGAATGAATGTACAATTTGTGGTAAGAAATTCAATAGGAAGAGTACATTAGTTGATCATATACGGATACATACCGGCGAGAGGCCTTATAGTTGCaagatttgtaataaatcatttgcACATCGGTTCTCATTGATAACACATATGAGAGGACATACAGGAGAGAAACCACATTCTTGTGTTATATGTGGCGACAAATTTGTTACTAAAAGTATACTGGATCGGCATATTAAACGAAAACATACATAA
Protein Sequence: MYECDICQKKIKFYGNLMLHRRRHLKDYMFSCEICGQGFIQHCEYKSHMEGKHNKSNLCNICGRSFYNKHGLDSHMKRHDEDYTGKRNFKCEYCTKSFMQMMHLKKHINRMHNVNRRKFVCDLCGQELASRGGLRYHKYAHEGVKENECKLCGKKFNRKSTLVEHMRTHSGEKPYCCKFCNKSFSQRSSLTIHLRQHTGEKPYTCNVCQDNFIKLASKYGLTIHKRIHQGLKKNQCTICGKKFVRFCTLKEHIRTHTGEKPYHCEICGRSFSQKTPLKVHLRLHTVKESVQCLYCPQVYNNRQRLERHLVTHPEYRPYSCKICAETFKWKNSLEIHQCIYDKYKCDICEKTFSNSFNLEYHRRRHMKNYSCENCEQVFVTDNELKQHTNKEHKTMNLISTLCEVCGKPFYDRRTLEYHMKRHESFAQMQNNFPCEICNKIFLRKANLLQHNKTVHNDNRRKFVCDLCGKVVATYHTLQFHKNTHEGIKMNECTICGKKFNRKSTLVDHIRIHTGERPYSCKICNKSFAHRFSLITHMRGHTGEKPHSCVICGDKFVTKSILDRHIKRKHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -