Basic Information

Insect: Lydus trimaculatus
Gene Symbol: -
Assembly: GCA_037414755.1
Location: JAZBGY010000869.1:1-4479[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.00059 0.033 14.3 0.1 1 23 12 35 12 35 0.95

2 28 1.4e-05 0.00081 19.4 1.3 2 23 42 63 41 63 0.97

3 28 3.6e-08 2e-06 27.6 0.6 1 23 69 91 69 91 0.99

4 28 0.0017 0.094 12.9 0.5 2 23 121 143 121 143 0.96

5 28 0.0012 0.067 13.4 4.0 1 23 148 171 148 171 0.96

6 28 0.33 19 5.7 1.7 3 23 180 198 179 198 0.76

7 28 0.00045 0.026 14.7 0.1 1 23 205 228 205 228 0.94

8 28 0.11 5.9 7.2 0.2 2 12 235 245 234 248 0.88

9 28 2.2e-07 1.3e-05 25.1 0.6 1 23 279 302 279 302 0.98

10 28 6.5e-05 0.0036 17.3 1.3 1 23 313 335 313 335 0.99

11 28 9.9e-06 0.00056 19.9 3.3 1 23 341 363 341 363 0.98

12 28 0.013 0.74 10.1 0.1 2 23 370 392 369 392 0.94

13 28 0.00043 0.024 14.8 4.2 1 23 397 420 397 420 0.96

14 28 0.15 8.4 6.8 0.8 3 23 429 447 428 447 0.86

15 28 0.00045 0.026 14.7 0.1 1 23 454 477 454 477 0.94

16 28 1.7e-05 0.00095 19.2 2.0 2 23 484 505 483 505 0.97

17 28 2.7e-08 1.5e-06 28.0 0.5 1 23 511 533 511 533 0.99

18 28 6.2 3.5e+02 1.7 0.6 1 10 539 548 539 548 0.92

19 28 0.00026 0.015 15.5 3.1 1 23 609 631 609 631 0.98

20 28 3.6e-06 0.0002 21.3 2.1 1 23 641 663 641 663 0.98

21 28 0.011 0.64 10.3 5.6 1 23 668 690 668 690 0.98

22 28 0.008 0.45 10.8 0.1 3 23 698 719 697 719 0.92

23 28 0.0015 0.087 13.0 4.4 1 23 724 746 724 746 0.93

24 28 0.11 6 7.2 4.6 2 23 754 773 754 773 0.95

25 28 0.00024 0.013 15.6 0.2 1 23 779 801 779 801 0.96

26 28 6.7e-07 3.8e-05 23.6 1.8 1 23 807 829 807 829 0.99

27 28 9.4e-07 5.3e-05 23.1 0.3 1 23 835 857 835 857 0.97

28 28 1.3 75 3.8 0.4 1 10 863 872 863 873 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.00059	0.033	14.3	0.1	1	23	12	35	12	35	0.95
2	28	1.4e-05	0.00081	19.4	1.3	2	23	42	63	41	63	0.97
3	28	3.6e-08	2e-06	27.6	0.6	1	23	69	91	69	91	0.99
4	28	0.0017	0.094	12.9	0.5	2	23	121	143	121	143	0.96
5	28	0.0012	0.067	13.4	4.0	1	23	148	171	148	171	0.96
6	28	0.33	19	5.7	1.7	3	23	180	198	179	198	0.76
7	28	0.00045	0.026	14.7	0.1	1	23	205	228	205	228	0.94
8	28	0.11	5.9	7.2	0.2	2	12	235	245	234	248	0.88
9	28	2.2e-07	1.3e-05	25.1	0.6	1	23	279	302	279	302	0.98
10	28	6.5e-05	0.0036	17.3	1.3	1	23	313	335	313	335	0.99
11	28	9.9e-06	0.00056	19.9	3.3	1	23	341	363	341	363	0.98
12	28	0.013	0.74	10.1	0.1	2	23	370	392	369	392	0.94
13	28	0.00043	0.024	14.8	4.2	1	23	397	420	397	420	0.96
14	28	0.15	8.4	6.8	0.8	3	23	429	447	428	447	0.86
15	28	0.00045	0.026	14.7	0.1	1	23	454	477	454	477	0.94
16	28	1.7e-05	0.00095	19.2	2.0	2	23	484	505	483	505	0.97
17	28	2.7e-08	1.5e-06	28.0	0.5	1	23	511	533	511	533	0.99
18	28	6.2	3.5e+02	1.7	0.6	1	10	539	548	539	548	0.92
19	28	0.00026	0.015	15.5	3.1	1	23	609	631	609	631	0.98
20	28	3.6e-06	0.0002	21.3	2.1	1	23	641	663	641	663	0.98
21	28	0.011	0.64	10.3	5.6	1	23	668	690	668	690	0.98
22	28	0.008	0.45	10.8	0.1	3	23	698	719	697	719	0.92
23	28	0.0015	0.087	13.0	4.4	1	23	724	746	724	746	0.93
24	28	0.11	6	7.2	4.6	2	23	754	773	754	773	0.95
25	28	0.00024	0.013	15.6	0.2	1	23	779	801	779	801	0.96
26	28	6.7e-07	3.8e-05	23.6	1.8	1	23	807	829	807	829	0.99
27	28	9.4e-07	5.3e-05	23.1	0.3	1	23	835	857	835	857	0.97
28	28	1.3	75	3.8	0.4	1	10	863	872	863	873	0.92

Sequence Information

Coding Sequence: ATGGAACGAATCCACAACGAGAATCGCCAAACATACATTTGTGATTTATGTGGAAAAGAAATAACATCGCTTTCAAGTTTAGAAGAACATCGTAAAGCTGTTCATCTAGGTGTAAAGTCATTACAATGCGATACTTGTGGAAAGAAGTTTGTCAAGAAGCGGACACTACTTATTCATAGGCGGATACATACTGGTGAAAAACCGTATGTTTGTACTATTTGTGGAAAACGATTTTCACAACGTAGTCCGTTAACAATACATCTACGTACACATTCAGGAGAGAAACcgtataattgtaatatttgtgaAGAGAAaAATTTAAGTAGACATTTGAAGAATCATTCAAATGGATTTAAACGGGTTTGTCAAGTTTGTGGTGATAGTTTTGAACGAATTACTGATTTCCGCAACCATATGAGACAACAACATGAAATTCTACCATTTGTTTGTAAGATTTGTGACAAAAATTACTCGAATAATTATTCGTTATTATGTCACATGAGTAAATTCCATGAGCAAAACACTGATAAAAGTCTATGTAAAATTTGTGGTGAAAAATTTATTCGTTTGAAGAATCATATGAAACGAATGCACAACGAGAATCGTCAAACATACATTTGTGATGAATGTGGAAAAGAAATAACATCGCTGTCTAGTTTAGAAGAACATAAGAAAGCTGTTCATCTTGGCGTCAGATCGTTACAATGCGATACTTGTGGAAAGAAATTTCCACGAGAGATTGATGAGAATTTGGTTGAATGTTCTGAATGTTCAAGAGTAATGTTGAAAGCAAGTTGGAAACGACATGCAACTACACACTCCGATGTTTACCCGTTTGAATGTGAAATCTGTGGCAAATCATTCAAACAATATCGACTTTTAACATTACATCAAAGAGTTGTCCACAGATCACCGAAAAGTGGCAATAGTCGACCATATTcttgtgaaatttgtaataaatcgtTTCAAATACGCGCCTATATGATTAAACATCAGAAGACTCACAACATATCCGAAAATTACGAATGTAATGTGTGtgatagaaaattcaaatattacagTAGCTTGATTCGACATTTCAAGAAACATTCAAGGGGATATAAACAAGTGTGCCAAATTTGTGGTAATGGTTTTCAAAAGATTGTTGATCTTCGAAATCATATGGAACAAGAACATGAAATTCTACCATTTGTTTGTAAGATTTGTGACAAAACTTACACGAATAATTATTCGTTATTATGTCACATGAGTAAATTCCATGAGCAAAACACTGATAAAAGTCTATGTAAAATTTGTggtgaaaaatttattagtttGAAGAATCATATGGAACGAATGCACAACGAGAATCGTCAAACATACATTTGTGATGAATGTGGAAAAGAAATAACATCGCTGTCTAGTTTAGAAGAACATAAGAAAGCTGTTCATCTCGGTGTCAGATCGTTACAATGCGATACTTGTGGAAAGAAATTCGTTAAGAAGAGAACTCTGTTGATTCACAAACGGACACATACGGGTGAAAAACCGTAcgtttgtaatatttgtggaAAACGATTTTCACAACGTAGTCCATTAACAATACATCTACGTACGCATTCAGGGGAGAAACcgtataattgtaatatttgtgaAGAGAAATTCTTAATAGTTGAAGAGAAATTCCTCAGTAAATCTGTTCGTGATCGTCATTTGAAGACGAAACATACAAATTTAATTGCCAGAAACATTGACGACAATTCAGTCCAATGTTCCGAATGTTCAAGAATTATGCTGAAAACTAGTTGGCGACAGCATGCATTAACACATTCCGATTTACGTCCATATTCATGcaaattttgccaaaaatcGTACAAATACAAACGCCTTTTATCATCACATTTACTTGTCCATTCACGACCGGAAAAGAAGATTCGCTTATACACTTGTGAAATATGTAGgaaatcatttaaatacaGTACATCGTTAAATATACATCGAAAAGTTCATGCTTCGCCTAGTTACGAGTGTAATCTTTGTCATAAAAAAATGAGATTCCGTCACAGTCTTGCCAAACATTTACGTTGGCATCGAGAACAACACAAAGGTATATGTGACATTTGTGGACAAGGATTTTCATCGGTTTTAGATTTACGAAGTCACAAAGAACAACTCCATCAAATTCTACCATTTCTTTGTAAAATCTGTGGTAAATCTTATAGTAATAATCATTCGTTACAATGTCATCTGTTGTTACACGAAGATGAATCGGATAAAAATCGGTGTAAAATCTGCAATAAGAAATATGCACATTTAAAACGACATATGTTGAAACAACATGAGAATCAGGAGAAATTCATTTGTGATTTATGTGGTAAAGAATTGACATCGGCTGCTagtttaaaacaacataaaaatctCCATTTGGGTGTTAAAGCGTTTCAATGTGATACATGTGGAAAGAAGTTTAGTAAAAGAACGACACTTGTTGTACATTTACGTACACATACTGGTGAGAAACCGCACGTTTGTGATATTTGTGGGAAAACATTTTCACAACGTAGTCCATTAGTGATACATTTACGTGGACATACTGGTGAAAAACCGTACAATTGTGAGATATGTGATGAGAAATTCGTCA
Protein Sequence: MERIHNENRQTYICDLCGKEITSLSSLEEHRKAVHLGVKSLQCDTCGKKFVKKRTLLIHRRIHTGEKPYVCTICGKRFSQRSPLTIHLRTHSGEKPYNCNICEEKNLSRHLKNHSNGFKRVCQVCGDSFERITDFRNHMRQQHEILPFVCKICDKNYSNNYSLLCHMSKFHEQNTDKSLCKICGEKFIRLKNHMKRMHNENRQTYICDECGKEITSLSSLEEHKKAVHLGVRSLQCDTCGKKFPREIDENLVECSECSRVMLKASWKRHATTHSDVYPFECEICGKSFKQYRLLTLHQRVVHRSPKSGNSRPYSCEICNKSFQIRAYMIKHQKTHNISENYECNVCDRKFKYYSSLIRHFKKHSRGYKQVCQICGNGFQKIVDLRNHMEQEHEILPFVCKICDKTYTNNYSLLCHMSKFHEQNTDKSLCKICGEKFISLKNHMERMHNENRQTYICDECGKEITSLSSLEEHKKAVHLGVRSLQCDTCGKKFVKKRTLLIHKRTHTGEKPYVCNICGKRFSQRSPLTIHLRTHSGEKPYNCNICEEKFLIVEEKFLSKSVRDRHLKTKHTNLIARNIDDNSVQCSECSRIMLKTSWRQHALTHSDLRPYSCKFCQKSYKYKRLLSSHLLVHSRPEKKIRLYTCEICRKSFKYSTSLNIHRKVHASPSYECNLCHKKMRFRHSLAKHLRWHREQHKGICDICGQGFSSVLDLRSHKEQLHQILPFLCKICGKSYSNNHSLQCHLLLHEDESDKNRCKICNKKYAHLKRHMLKQHENQEKFICDLCGKELTSAASLKQHKNLHLGVKAFQCDTCGKKFSKRTTLVVHLRTHTGEKPHVCDICGKTFSQRSPLVIHLRGHTGEKPYNCEICDEKFV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -