Ltri005966.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- -
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000869.1:10667-15224[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.016 0.9 9.8 1.9 1 23 9 31 9 31 0.99 2 33 0.0072 0.4 10.9 0.1 3 23 39 60 38 60 0.93 3 33 0.0012 0.068 13.4 4.2 3 23 67 87 66 87 0.97 4 33 3.1e-06 0.00017 21.5 2.7 1 23 97 120 97 120 0.98 5 33 0.00058 0.032 14.4 1.0 1 23 127 149 127 149 0.98 6 33 1.1e-06 6.4e-05 22.9 2.1 2 23 156 177 156 177 0.98 7 33 0.00011 0.006 16.7 7.9 1 23 183 205 183 205 0.98 8 33 0.0001 0.0057 16.7 2.1 1 23 226 248 226 248 0.99 9 33 0.018 0.99 9.7 0.1 3 23 256 277 255 277 0.93 10 33 1.8e-06 0.0001 22.2 0.6 2 23 281 302 281 302 0.97 11 33 0.0071 0.4 10.9 2.9 2 23 313 335 312 335 0.96 12 33 0.0025 0.14 12.3 0.1 1 23 342 364 342 364 0.96 13 33 8.1e-06 0.00045 20.2 4.4 2 23 371 392 371 392 0.98 14 33 1.2e-06 6.6e-05 22.8 4.9 1 23 398 420 398 420 0.98 15 33 0.24 14 6.1 1.9 1 23 426 449 426 449 0.94 16 33 9.1 5.1e+02 1.1 0.5 2 23 463 483 462 483 0.83 17 33 0.00025 0.014 15.5 3.1 1 23 489 511 489 511 0.97 18 33 0.011 0.63 10.3 0.2 1 23 525 548 525 548 0.95 19 33 1.6 88 3.6 1.3 2 23 557 576 557 576 0.88 20 33 0.00046 0.026 14.7 0.1 1 23 584 606 584 606 0.98 21 33 6e-06 0.00034 20.6 0.4 2 23 613 634 612 634 0.97 22 33 2.4e-05 0.0013 18.7 3.1 1 23 640 662 640 662 0.98 23 33 6.3 3.5e+02 1.7 3.3 1 23 668 691 668 691 0.84 24 33 0.34 19 5.7 0.4 2 23 705 725 704 725 0.96 25 33 8.1e-06 0.00046 20.2 1.6 1 23 731 753 731 753 0.98 26 33 0.0011 0.062 13.5 1.5 1 23 759 781 759 781 0.97 27 33 0.0019 0.11 12.7 0.4 2 23 788 810 787 810 0.96 28 33 0.015 0.84 9.9 0.3 1 23 815 838 815 838 0.93 29 33 1.2 68 3.9 0.3 2 23 847 866 847 866 0.85 30 33 0.0012 0.069 13.3 0.4 1 23 874 896 874 896 0.97 31 33 3.6e-05 0.002 18.2 0.3 1 23 902 924 902 924 0.98 32 33 5.3e-07 3e-05 23.9 0.8 1 23 930 952 930 952 0.99 33 33 0.29 16 5.9 2.5 1 22 958 979 958 981 0.78
Sequence Information
- Coding Sequence
- ATGGTGCATGATGATTCGAAACCATACGAATGtgatatttgtttgaaacgtttaaaaaaatatcaaagttATATTGATCATCGACGTCGTCATTTGAaagattttaaagaattttgtaaaatttgtaatattggtTTTATATCAACAGCTGAATATAAAGCCCATATGGATGGTAAACATGGTGATCGTTCAAATATCTGTACAATATgcaataaaacattttattgtaaatatagtTTAAAATATCATATGCGATTACATGAGGATGGCTATCGTGAAAAGCGTAATTTCAAATGTGATTCATGTAACAAATCATTCTCGCAAAAACTGTATTTGAATCGACACATTAAAATGATGCATAAAGATGGTGGACAGAAATTCGTTTGTGATTTATGTGGTAAAGAATTGAGAACAATGGTGAGTTTGCGGCATCATAAAAACGTACATCAGGGTGCTAAACCGAATGAATGTAAATTGTGTGGAAAGAAATTCAATCGTAAAACGACATTAGTTTTACATATGCGCACACATTCTGGTGAACGACCGTatagttgtaaattttgtgGTAAATCATTCACACAACGATGTACATTAACGATACATCATCGACAACATACTGGCGAGAAACCGTACAGTTGTGATATCTGCCAAGACAAATTCATCAGCAAAACCGAATATGAATGTGATATTTGCCAGAAACGTATCAAAACGAAACAAGGCTTCACAAATCATCAACGTCGTCATTTGAAAGATTACAAAGAGATTTGTAGTATTTGTGGTAGTGGTTTTATATCAACAGCTGAATATCGTTCGCATATGGAAGGCAAACATGGTACaaatgtttgtaatatttgtcaaaaatcattttatgataaatacgCATTAAGAGACCATATGAAATTGCACGATCAAAACTATTACGAAAATCGTAATATTAAATGTGATTTCTGTCCGAAAACGTTTCTACAAATGCTACATTTGAAGAAACACATCAAACGGATGCATAACGATAATCGACAGAAATATATTTGCGATTTGTGTGGGAAAGAATTGAAGAGTCTTGGTGGTTTACGGGATCACAAGAATGGCCATCAAGGTATCAAACCGAATGAATGTAAAATTTGCCATAAACGTTTCAATATGAAAGATACATTACGATTGCATATGAGGACGCATTCTGGTGAACGTCCATACAGTTGTAAATATTGTGGGAAATCGTTTACGCAACGTTGCTCGTTAACAATACATTTACGACAACATACAGGAGAGAAACCGTATAATTGTGAAATCTGTTGTGATCGATTTGTGAGTAAAGGGGCGCTTACAACACATCTCAAAAACAAAcatggaaaattattTGCACGACGTATTAGCGAGAACTCAATCCAATGTTCTGaatgtttcaaaataatgttgaaaactAGTTGGAGACGACATGTGATCACACATTCAGAAACACGTCCgcataaatgtaaaatttgcGAGAAATCATTCAAAGATCCACGAATTCTAACAGCACACCAACATGTACATTTAAGTACACATATGGAGAAATTagatcaaattaaattatttctatgTCCATTGTGCGGTATACCAAATAAAAGTAATTACGCTTTGAAAATCCATATCAAACGTCGACATGATAATAATCTACCAAACAAGCGTAcatgtaaaatttgtaataaagatTATCTAGATTTATACAGTCATATGAGAAAGACACATCGTAACGGTATAAGACAGAAATTCGTTTGTGATTTATGTGGAAAAGAGATTGCATCTTACAGTAGTTTAAAAGAACataaaaatgtacatttaGGTGTTAAAACGATTGAGTGTGGTGTATGTGGGAAGAAATTCGCAAAGAAACGTACATTATTGATACATTTACGGACACATACCGGTGAGAAACCGTACGTTTGTCATATTTGTGGAAAGAAATTTGCACAACATAGTCCATTAGTGATACATGTACGACATCATACAGGTGAAAAACCGTTCAATTGTGAGCTTTGTGAAGAGAAATTCATTAGTAAAAATTCACGTGATTgtcatttaaaaacaaaacattacaaattAGTTGCcaaagaaattgatgaaaattcaatCCAGTGTTCTGAATGTTCGAAAATCATGCGTAAAGTCAGTTGGAGACGGCATGTATTAACACACTCAATTATACGTCCATATTCATGTCGAATTTGTcaaaaatcattcaaatatcCATTACTTTTAAAATCACATCAACGTATCCATACATTCTCACCAACTTACAACTGTGATATTTGtggtaaacaattaaaacattatcCAAGTTTATTAAAACACCGTCTGCTACATTCGAAAACTTGTAAGAAACAATGCGAAATCTGCAATGAAGGCTTCCAACGTATCGCCGATTATCGTACACACATGGAAAAATCACATCAAATCAATTCATTCGTTTGTTCATATTGTGGCATATCATTCCAATGGAATTATGTGTTGAAACTACACATTGAACGACAACACGAAGGCAAAATCGCAAAGAAACGTACATGTGATATATGCAATAAAGACTATCTATCTTTGGCGGATCATATGAGACGTATACATTTCAGAACAATTCGACAGAAATTCATTTGTGATTTATGTGGGAAAGAATTGACAACATTTCAAAGTTTAAATGATCATAAAAATGTACATTTCGGTGTGAAAGCATTCGAATGTGGTATATGTGGTAGGAAGTTTGCTAAAAAACGTACATTAGTGATACATTCACGGATACATACTGGTGAGAAACCGTACGTTTGTCATGTTTGTGGTAAAGAATTCTCACAACGTAGTCCATTAGTCATACATTTAAGGAAACATACAGGTGAAAAACCGTTTAATTGTGAGATTTGTGATGAACGATTTGTTAGCAAATATGCTCGTGATTGTCATGTGAAAACAAAGCATTGA
- Protein Sequence
- MVHDDSKPYECDICLKRLKKYQSYIDHRRRHLKDFKEFCKICNIGFISTAEYKAHMDGKHGDRSNICTICNKTFYCKYSLKYHMRLHEDGYREKRNFKCDSCNKSFSQKLYLNRHIKMMHKDGGQKFVCDLCGKELRTMVSLRHHKNVHQGAKPNECKLCGKKFNRKTTLVLHMRTHSGERPYSCKFCGKSFTQRCTLTIHHRQHTGEKPYSCDICQDKFISKTEYECDICQKRIKTKQGFTNHQRRHLKDYKEICSICGSGFISTAEYRSHMEGKHGTNVCNICQKSFYDKYALRDHMKLHDQNYYENRNIKCDFCPKTFLQMLHLKKHIKRMHNDNRQKYICDLCGKELKSLGGLRDHKNGHQGIKPNECKICHKRFNMKDTLRLHMRTHSGERPYSCKYCGKSFTQRCSLTIHLRQHTGEKPYNCEICCDRFVSKGALTTHLKNKHGKLFARRISENSIQCSECFKIMLKTSWRRHVITHSETRPHKCKICEKSFKDPRILTAHQHVHLSTHMEKLDQIKLFLCPLCGIPNKSNYALKIHIKRRHDNNLPNKRTCKICNKDYLDLYSHMRKTHRNGIRQKFVCDLCGKEIASYSSLKEHKNVHLGVKTIECGVCGKKFAKKRTLLIHLRTHTGEKPYVCHICGKKFAQHSPLVIHVRHHTGEKPFNCELCEEKFISKNSRDCHLKTKHYKLVAKEIDENSIQCSECSKIMRKVSWRRHVLTHSIIRPYSCRICQKSFKYPLLLKSHQRIHTFSPTYNCDICGKQLKHYPSLLKHRLLHSKTCKKQCEICNEGFQRIADYRTHMEKSHQINSFVCSYCGISFQWNYVLKLHIERQHEGKIAKKRTCDICNKDYLSLADHMRRIHFRTIRQKFICDLCGKELTTFQSLNDHKNVHFGVKAFECGICGRKFAKKRTLVIHSRIHTGEKPYVCHVCGKEFSQRSPLVIHLRKHTGEKPFNCEICDERFVSKYARDCHVKTKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -