Ltri006378.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lydus trimaculatus
Gene Symbol
-
Assembly
GCA_037414755.1
Location
JAZBGY010000961.1:23091-28718[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 6.9 3.9e+02 1.5 0.1 9 20 51 62 49 64 0.86
2 31 0.02 1.1 9.5 4.5 1 23 71 93 71 93 0.98
3 31 0.047 2.6 8.3 2.8 1 23 98 120 98 120 0.98
4 31 9.1e-05 0.0051 16.9 1.4 1 23 126 148 126 148 0.99
5 31 2.6e-05 0.0015 18.6 5.6 1 23 154 176 154 176 0.99
6 31 0.00023 0.013 15.6 2.7 1 23 182 204 182 204 0.98
7 31 1.8e-05 0.001 19.1 4.9 1 23 210 232 210 232 0.99
8 31 9e-06 0.0005 20.0 4.3 1 23 238 260 238 260 0.98
9 31 0.075 4.2 7.7 2.9 1 23 266 288 266 288 0.97
10 31 0.00035 0.02 15.1 1.3 1 23 294 316 294 316 0.99
11 31 0.00029 0.016 15.3 0.7 1 23 322 344 322 344 0.98
12 31 2.5e-07 1.4e-05 25.0 1.2 1 23 350 372 350 372 0.99
13 31 0.0001 0.0058 16.7 3.1 1 23 460 482 460 482 0.98
14 31 4.9e-05 0.0028 17.7 5.9 2 23 546 567 546 567 0.97
15 31 0.003 0.17 12.1 6.7 1 23 573 595 573 595 0.97
16 31 0.00026 0.014 15.5 4.6 1 23 601 623 601 623 0.98
17 31 3.1e-05 0.0017 18.4 0.6 1 23 629 651 629 651 0.98
18 31 1.4e-07 7.9e-06 25.7 4.1 1 23 657 679 657 679 0.99
19 31 0.0035 0.2 11.9 2.0 1 23 685 707 685 707 0.98
20 31 3.7e-07 2.1e-05 24.4 1.7 1 23 713 735 713 735 0.98
21 31 1.5e-05 0.00082 19.4 0.8 1 23 741 763 741 763 0.98
22 31 0.25 14 6.1 0.1 1 10 769 778 769 784 0.94
23 31 0.0046 0.26 11.5 6.1 1 23 847 869 847 869 0.99
24 31 0.0022 0.12 12.6 3.1 2 23 876 897 875 897 0.96
25 31 6.3e-06 0.00036 20.5 0.8 1 23 903 925 903 925 0.98
26 31 1.2e-05 0.00065 19.7 1.7 2 23 930 951 930 951 0.97
27 31 1.8e-05 0.001 19.1 6.5 1 23 957 979 957 979 0.98
28 31 0.00028 0.016 15.4 1.1 1 23 985 1007 985 1007 0.98
29 31 1.3e-06 7.2e-05 22.7 2.7 1 23 1013 1035 1013 1035 0.98
30 31 3.6e-06 0.00021 21.3 1.7 1 23 1041 1063 1041 1063 0.99
31 31 1.8e-06 0.0001 22.3 1.5 1 23 1069 1091 1069 1091 0.98

Sequence Information

Coding Sequence
ATGTATCCTCTTTTAGATAATAAAGCCGATCTAACTGATGATGAAAACATTTACCAAaggaatgaaataaaaaaagacaGTGACATCAATGAGTATTTTCGAGGACAACAAGATCCTTTAGCAATTGAAAATGAATATAATGagaaaatcgaattttcatACAGCAATAACTTGAATAAACATTCAAAACTATCTACTGCTGATAAACCATTCGAATGTGGTACTTGTTATAAACGATTTTCTTGTAACAAATACTTGAAAGTACATTTGAAAATCCATGGTGAGAAACCATACGAATGTAGTATTTGTCATAGTAAATTTCTACGTAATGATAAATACAATGAACATTTAAAGGTACATACAGGTGAAAAACCATATGAATGTGTTATTTGTCAAAAGAAATTCTTACgtaaagataaattaaaagaacatCAAAGAGTACATACCGGTGATAAACCATATGAATGTGATTTTTGTCATGAGAAATTCTCATATagttcaaattataaaaatcatttgagAAAACATACGGGGGAAACACCATATAAATGTCGTATTTGTCATAAAGAATtcacattaattaattcattaaagaaacatctaTTAATACATACTGGTGATAAACCATATAAGTGTaatgtttgttataaacaattttcacgTAATGATCATTTTAAAGAACATTTAAAAGTACATAGTGGTGAAAAAGCGTTTGAATgtaatatttgcaataaacgATTCTATCGTAATCAACACTTAAaagaacatttaaaattacataacgATGATCAAACATATGAATGTGATATatgtttaaagaaatttcCATGTAGCAGATATTTACAAACACATTCAAAAATACATACCGGTGAAAAACCATATGAATGTGGTATTTgtaataagaattttttacGTAACGATAAATTCAAAGTACATTTAAAAATGCACACTGGTGATAAATTGTATGAATGTAGTACTTGTAATAAGAAATTTATATGGAATTATGAATTAAAAGAACATGTTAGAATACATACTGGGGAGAGACCATATGAATGTGGTATTTGTGATAAGAAATTCtcatctaataaatatttaaaggaACATCAAAGAGTACATAGTGGTGAGAGACCATATGAATGTGAAAATGAAGctgaattatttgatgataacaTCTACCAACATAATGTGATAAAGGAAGAGACGAATGATGATAATACTGGTGAAACAAATGATGAAGACATTGAAGAAGCTGCTTTAAAAATTGCTAAATATGTAGTTTCTAATTGTATGActatatcaaaaaaatgctTTTCAGGACATGAAACAATAACTGATAAGAATATGATGGTATATATAAAACACAACAGTAATAAACCATATGTTTGTGGTATTTGTCATAAACAGTTTGCTCGTAAACACTACGTAACAAATCATTTAATGATACATACAAATGATCGACCATATGAATGTAATGATAATCGAGTGAAAAAAGAGGATATTGATATTGATACTAATGAAGAAAGCAGTAAGGATACTTATGAGTGTGTCATAAAACAAGAAACGGATATTACAGAAGATCCTCTAGCAATTGACAATAGAAGTAGTATTGAGCTAACAGAAACAGACAATAGCAATGAATGTCATATTTGCCATAAGAAATATTCGTATAgaactaatttaaataaacatttaaaagtaCATATTGGTGACAAATCGCATGAATGTACTTTATGTCACAAAAAGTTTATGCGTAacgataaattaaaagaacattTTCGATTGCATACTGGTGAAAAACCATACGAATGTAGTATTTGCCATAAAACATTTCTACGCAACCACAAATTACAAgaacatataaaaatacatacCGGTGATAAACCATACGAATGTAATATTTGTCTGAAGAGATTTATACGTAATGATCGATTAAAAGAACATTTAAATGTACATACAGGTGATAAACCATATAAATGTGATATTTGtaataagaaattttcaagaaaCGACCacttaaaacaacatttgaaaGTACATTCTGGTGAACAGCCATACGAATGTGGTACTTGTTTAAGAAGATTCTTACGTAGTGATCATTTGAAAGAACATTTAAAAGTACATACTGGTGATCAACCATATGAATGTGATATTTGTCAGAAGAGATATACCACAAATAGAAATCTACAAAGACATATAAAATTACATACCGGCGAGAAACCATATGAATGTAATGTTTGTCAATGGAAATTTGTACGAAAAGAAAgattacaacaacatttgaaaatacatACTGGTGAAAAACCGTATGAATGCAGTATTTGTAATAAGAGATTCTTATAcgaattattgcaaaataaagtATTTACTTTAGAAGATGAAGAAATCATTGATGAAAACATTTACCAACATAATGAAGTGAAGAAAGAGGACAATGATACTGATACTAGTGAAGATACTTACGAGTCTGCTTCAGAACAGCAAACACATATTGCAAATGATCCTCTAGCAATTGGCAATGATGGAAATAGTGATAAACCGTATAAATGTCATATTTGCCATAAGAAATACAAATATGGcagtattttacaaaaacatctaaaAGTACACACTAGTGACAAACCAGATGAATGTACAATTTGTCATAAAACGTTTTTACGTAGCGATAAATTAAAAGATCATTTCCGATTGCATACTGGTGAAAAACCATACGAATGTGATAGTTGTGATAAAAAATTCCCatctaataaatctttaaaagaACATTTAAAAGTCCATACTGGTGATAATGAATGTAATATTTGTCATAAAAGATTTATACGTTACGGTAAATTACAAGAACACATGAATGTACATACAGGTGATAGACCATATGAATGTGATATTTGTCATAAGAGATATACAAGAAAAgatcatttaaaacaacattttaaagTACATTCTGGTGAACGACCATATGAATGTGATACTTGTCAAAGAAGGTTTCTACGTAGTGATTCATTAAAAGAACATTTAAAAGTACATACAGGTGAACGACCATATGAATGTCATATCTGCCAGAAGACGTATAAAAGTAATTGGAATTTACAGACACATATCAAATTACATAATGGTGATAAATCATATAAATGTAGTATTTGTTATTGGACGTTTGTACGAAAGGAGAGATTGAAACAACACATGAAAGTACATAGTAATGGGAAACCGTATGAATGTAGTATCTGTCATAAAGTGTTTGTAcgaaatgataattttgaattgcaTTTAAAAGAACATAAGGGCGTACAgtcataa
Protein Sequence
MYPLLDNKADLTDDENIYQRNEIKKDSDINEYFRGQQDPLAIENEYNEKIEFSYSNNLNKHSKLSTADKPFECGTCYKRFSCNKYLKVHLKIHGEKPYECSICHSKFLRNDKYNEHLKVHTGEKPYECVICQKKFLRKDKLKEHQRVHTGDKPYECDFCHEKFSYSSNYKNHLRKHTGETPYKCRICHKEFTLINSLKKHLLIHTGDKPYKCNVCYKQFSRNDHFKEHLKVHSGEKAFECNICNKRFYRNQHLKEHLKLHNDDQTYECDICLKKFPCSRYLQTHSKIHTGEKPYECGICNKNFLRNDKFKVHLKMHTGDKLYECSTCNKKFIWNYELKEHVRIHTGERPYECGICDKKFSSNKYLKEHQRVHSGERPYECENEAELFDDNIYQHNVIKEETNDDNTGETNDEDIEEAALKIAKYVVSNCMTISKKCFSGHETITDKNMMVYIKHNSNKPYVCGICHKQFARKHYVTNHLMIHTNDRPYECNDNRVKKEDIDIDTNEESSKDTYECVIKQETDITEDPLAIDNRSSIELTETDNSNECHICHKKYSYRTNLNKHLKVHIGDKSHECTLCHKKFMRNDKLKEHFRLHTGEKPYECSICHKTFLRNHKLQEHIKIHTGDKPYECNICLKRFIRNDRLKEHLNVHTGDKPYKCDICNKKFSRNDHLKQHLKVHSGEQPYECGTCLRRFLRSDHLKEHLKVHTGDQPYECDICQKRYTTNRNLQRHIKLHTGEKPYECNVCQWKFVRKERLQQHLKIHTGEKPYECSICNKRFLYELLQNKVFTLEDEEIIDENIYQHNEVKKEDNDTDTSEDTYESASEQQTHIANDPLAIGNDGNSDKPYKCHICHKKYKYGSILQKHLKVHTSDKPDECTICHKTFLRSDKLKDHFRLHTGEKPYECDSCDKKFPSNKSLKEHLKVHTGDNECNICHKRFIRYGKLQEHMNVHTGDRPYECDICHKRYTRKDHLKQHFKVHSGERPYECDTCQRRFLRSDSLKEHLKVHTGERPYECHICQKTYKSNWNLQTHIKLHNGDKSYKCSICYWTFVRKERLKQHMKVHSNGKPYECSICHKVFVRNDNFELHLKEHKGVQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-