Ltri008409.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lydus trimaculatus
Gene Symbol
-
Assembly
GCA_037414755.1
Location
JAZBGY010001561.1:2849-16437[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.00039 0.022 14.9 0.2 1 23 18 40 18 40 0.98
2 30 5.5e-07 3.1e-05 23.9 0.4 2 23 47 68 47 68 0.97
3 30 1.2e-06 6.6e-05 22.8 0.2 1 23 90 112 90 112 0.98
4 30 1.7e-05 0.00095 19.2 2.6 2 23 119 140 118 140 0.97
5 30 1.6e-06 8.9e-05 22.4 0.5 1 23 146 168 146 168 0.98
6 30 0.0086 0.49 10.7 4.5 2 23 197 218 196 218 0.96
7 30 0.00078 0.044 13.9 4.3 1 21 224 244 224 249 0.93
8 30 4.1e-05 0.0023 18.0 2.8 1 23 252 274 252 274 0.97
9 30 0.0024 0.13 12.4 0.2 3 20 282 299 280 300 0.95
10 30 0.00019 0.011 15.9 1.9 3 23 312 332 311 332 0.99
11 30 2.3e-05 0.0013 18.8 1.6 1 23 342 365 342 365 0.98
12 30 0.0004 0.022 14.9 0.3 1 23 372 394 372 394 0.97
13 30 8.7e-07 4.9e-05 23.2 2.2 3 23 402 422 401 422 0.97
14 30 1.9e-06 0.0001 22.2 0.4 1 23 428 450 428 450 0.98
15 30 0.0019 0.1 12.8 0.7 1 23 473 495 473 495 0.97
16 30 5.9e-05 0.0033 17.5 0.5 2 23 502 523 502 523 0.98
17 30 0.0013 0.075 13.2 3.6 3 23 543 563 542 563 0.99
18 30 0.00068 0.038 14.1 3.6 1 23 573 596 573 596 0.98
19 30 0.0004 0.022 14.9 0.5 1 23 603 625 603 625 0.98
20 30 4.9e-06 0.00027 20.9 0.8 2 23 632 653 631 653 0.98
21 30 0.00018 0.01 15.9 3.8 1 23 659 681 659 681 0.98
22 30 4.8e-06 0.00027 20.9 1.1 1 23 706 728 706 728 0.98
23 30 0.0078 0.44 10.8 0.9 1 23 733 756 733 756 0.96
24 30 0.0011 0.063 13.4 0.2 1 23 762 784 762 784 0.95
25 30 8.7e-06 0.00049 20.1 1.4 3 23 789 808 788 808 0.99
26 30 0.0012 0.066 13.4 1.2 1 23 818 841 818 841 0.98
27 30 0.00039 0.022 14.9 0.2 1 23 848 870 848 870 0.97
28 30 0.00071 0.04 14.1 2.5 1 23 876 898 876 898 0.98
29 30 3.8e-07 2.1e-05 24.4 0.3 1 23 904 926 904 926 0.98
30 30 0.0073 0.41 10.9 0.6 1 23 932 955 932 955 0.96

Sequence Information

Coding Sequence
ATGCATTTGAAGAAACATATAAGACGTATGCATAATGAGAATCGACGTAAATATATTTGTGATTTATGTAATAAAGAATTGGCCAGCCAGTATGGTTTAACGGTACATCGGAAAATCCATCAAGGTCTTAAGAAAAACGAATGTACAGTATGTGGAAAGAAATTCGTAAGATTGAGTACATTAAAAGAACATATACGTATACATTCTGGTGAGAAACCATATAGTTGTGAAGTTTGTGAAAGGATGCACAGTGATGATCGtcgtaaatttatttgtaccATTTGTAATAAAGAAGTAACAAGTAGTTCTTCATTAAAAGCACATATACGTGTACATCAAGGCATAAAACCGCTTGAATGTAAATTTTGTCATAAGAAATTTGGACGACGAGATACATTAGTTGTACATATTCGTACACACACTGGCGAAAAACCATTTGTTTGTAGTGTTTGTGGTAAAGCATTTTCACAACAAACTCCACTGAAGAATCATCTTAAACAACATACAGAAGAGAAGTCaaataaaaaaacaagtaaacaGAAACGGCATACATCGAAAATCGACAAATCAAAATCTGAAAATGCTTTACAATGTCCGTATTgtatgaaaatttgtaaacataAACGTGCATTAAGGAAACATTTATATGTTCATAAAGAAATCCAACCATATTCGTGTGGTATATGTAAGAAAACATTCAAACGGAGAACATCATTACACGATCATAAATGTATTAATGATGATCATGTGAAGCATGAGTGTAAAATTTGCGGTAGACGACTTAGTAGTTTGTACAATTTAAAACAGCATCGCCTTCGacatttgaaacaatataAAGTCAATTGTGAGATTTGTGGACAAGGTTGTATGTCGAATAGTGAACTTCGACAACATATGGATTGTAAACATAACAATGAtggtaaatcaaatttatgcaATATTTGTGGTAAATTCTGTTACAATAAAGCATCATTAGAGTATCATGTGAAAACACATGAtgataaatatacagaaaataGACACTTTGAATGTACATTTTGTTCGAAGAGTTTTTCACAAATGATCCTTTTAAGAAGTCATATACGACGGATGCACAATGATAATCGTCGTAAGCATGTTTGTAATGTTTGCAATAAAGAATTGGCTAGTGCTTACGGTTTAACTGTACATAAACGTATACATGAAGGTATCAAACCAAATATGTGTAGTTTTTGTGATAAGAAATTCACTAGGAAAGATACATTAATCCAACATATCCGAACACATTCCGAAGAGAAACCATACATTTGCCCGATATGCAATAGAGCATTTACGCAGAGTACACCGTTGAAGAATCATTTGAGACAACATACAGGACAGAAACCTTACTCCTGTGATATTTGCTATGATAAAATGCATAATGATAATCGTCGTAAGCATGTTTGTAATGTTTGCAATAAAGAATTAGCTAGTGGTTATGGtttaacaaaacataaacGTATCCATGAAGGTATCAAACCAAAtgaatgtaatttttgtgGTAAAAAGTTCATTcgaaaagaaatattaattgaacatATTCGAACGCATACTGGTGAACAACCgaataataaagaaaagaagaaaagatgtaataaaattgtgctTTGTACTGTTTGTGGTCAATCGCTTCATAGCAAACATTATTTGGAAGAACATATGAGAAGGCATGAAGAAAACTATCGTGAAAAACGCAACTACCAATgcaatttttgtacaaaagcCTTCTTACAAAAAACCCATTTAACTGGACATATTAGAAGAATGCATAATGATAATCGTCGCaaatatatttgtaatgtttgtcATCAAGTATTAGCCAGTAATTATGGTTTGACTGTACATAAACGTATTCATGAAGATATAAAACCAGTACAATGTGATCTTTGTGATAAGAAATTTATAACGAAAGGTCGATTATCGGAACATATGCGTACACATTCCGGTGAAAAACCGTATATATGTAGATTTTGTAATAGAGGATTTACACATAGAACTGCATTAAGGAACCATTTAAGACAACATACTGGAGAGAAACCGCATTCTTGTGATTACTGTGAAAGACATATGCGATTTGTACATACCGAAGATCGACCATTTTCATGCGAAATTTGCCAGAAACCGTTCAAACATATCGATGCATTAAGAATACATCAAAACACACATAATAAAGGACAATTTGAATGTGATATTTGTCAAATAAAAGTATCGTCAAAGATGAcattaaaatatcataaaCTACGATTGCATTTTAAAGATTATCGATTTAATTGTGAGATTTGCGGACGTAAATTCGTAGTGTTTGGTGAATATAATCAACATCTTGAAGGACATAATAAAAGTCTGTGTAATATTTGTGGTCAATCATTCTCTAATCGGAATTTAAAATGGCATATGAGACGACATGCAGAAAATTACGGTGAAAAACGTGAttataaatgtgaattttgtgCAAAAACATTTGTGGAAATGTTATATTTAAGAACGCATATTCGGCGGATGCACGATGATAGTCGTATGAAATTTATTTGCGATTTATGTGGTAAAGAATTGACAACGGCTAAAGGTTTAAGGGAGCACAAAAATTCTCATCTAGGTATTAAATCACATGAATGTACTGTTTGTGGAAAGAAATTCGTTAAAGGGTTAACTTTGAAACTCCATAAACGTACACATACTGGTGAAAAACCACATGTTTGTGAGATTTGTGGCAAATCATTTGCACAACGTAGTCCATTAGTGATACATTTACGTACACATACAGGTGAAAAACCGTATGATTGTGAGATTTGTAAAGAAGCATTTATCAGTAAATCGGCACGTGATTatcatttgaaaaagaaacatcaaaaattgtag
Protein Sequence
MHLKKHIRRMHNENRRKYICDLCNKELASQYGLTVHRKIHQGLKKNECTVCGKKFVRLSTLKEHIRIHSGEKPYSCEVCERMHSDDRRKFICTICNKEVTSSSSLKAHIRVHQGIKPLECKFCHKKFGRRDTLVVHIRTHTGEKPFVCSVCGKAFSQQTPLKNHLKQHTEEKSNKKTSKQKRHTSKIDKSKSENALQCPYCMKICKHKRALRKHLYVHKEIQPYSCGICKKTFKRRTSLHDHKCINDDHVKHECKICGRRLSSLYNLKQHRLRHLKQYKVNCEICGQGCMSNSELRQHMDCKHNNDGKSNLCNICGKFCYNKASLEYHVKTHDDKYTENRHFECTFCSKSFSQMILLRSHIRRMHNDNRRKHVCNVCNKELASAYGLTVHKRIHEGIKPNMCSFCDKKFTRKDTLIQHIRTHSEEKPYICPICNRAFTQSTPLKNHLRQHTGQKPYSCDICYDKMHNDNRRKHVCNVCNKELASGYGLTKHKRIHEGIKPNECNFCGKKFIRKEILIEHIRTHTGEQPNNKEKKKRCNKIVLCTVCGQSLHSKHYLEEHMRRHEENYREKRNYQCNFCTKAFLQKTHLTGHIRRMHNDNRRKYICNVCHQVLASNYGLTVHKRIHEDIKPVQCDLCDKKFITKGRLSEHMRTHSGEKPYICRFCNRGFTHRTALRNHLRQHTGEKPHSCDYCERHMRFVHTEDRPFSCEICQKPFKHIDALRIHQNTHNKGQFECDICQIKVSSKMTLKYHKLRLHFKDYRFNCEICGRKFVVFGEYNQHLEGHNKSLCNICGQSFSNRNLKWHMRRHAENYGEKRDYKCEFCAKTFVEMLYLRTHIRRMHDDSRMKFICDLCGKELTTAKGLREHKNSHLGIKSHECTVCGKKFVKGLTLKLHKRTHTGEKPHVCEICGKSFAQRSPLVIHLRTHTGEKPYDCEICKEAFISKSARDYHLKKKHQKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-