Ltri005833.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- Zbtb41
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000838.1:24555-37709[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 43 0.0014 0.076 13.2 1.3 2 23 5 25 4 25 0.96 2 43 0.0083 0.47 10.7 6.3 1 19 31 49 31 52 0.88 3 43 0.00063 0.035 14.2 3.5 1 23 57 79 57 79 0.99 4 43 0.026 1.5 9.2 0.5 2 23 86 108 85 108 0.95 5 43 0.00023 0.013 15.6 3.0 1 23 156 179 156 179 0.98 6 43 0.013 0.75 10.1 0.3 1 23 186 208 186 208 0.96 7 43 5e-07 2.8e-05 24.0 1.2 2 23 215 236 214 236 0.97 8 43 3.1e-06 0.00017 21.5 3.0 1 23 242 264 242 264 0.98 9 43 1.1 59 4.1 2.4 9 23 289 303 283 303 0.81 10 43 0.00021 0.012 15.7 2.8 1 19 309 327 309 330 0.94 11 43 1.8 1e+02 3.4 0.5 1 12 337 348 337 351 0.83 12 43 0.0087 0.49 10.6 2.0 2 23 351 373 350 373 0.96 13 43 0.0017 0.096 12.9 4.2 1 23 382 404 382 404 0.96 14 43 0.0024 0.13 12.4 2.7 1 23 414 437 414 437 0.98 15 43 0.0016 0.087 13.0 1.3 1 23 444 466 444 466 0.98 16 43 1.1e-06 6e-05 23.0 0.5 2 23 473 494 472 494 0.97 17 43 2.5e-05 0.0014 18.7 2.5 1 23 500 522 500 522 0.98 18 43 0.00012 0.0065 16.5 0.2 1 23 528 550 528 550 0.98 19 43 0.0001 0.0058 16.7 1.4 1 23 560 582 560 582 0.98 20 43 0.00021 0.012 15.7 3.0 1 23 588 610 588 610 0.98 21 43 0.19 10 6.5 0.5 3 23 618 639 616 639 0.88 22 43 8.8e-05 0.0049 16.9 0.3 3 23 645 665 644 665 0.99 23 43 0.0011 0.062 13.5 8.3 1 23 675 698 675 698 0.98 24 43 0.0035 0.2 11.9 0.0 1 23 705 727 705 727 0.96 25 43 0.0012 0.069 13.3 0.5 1 23 748 770 748 770 0.96 26 43 0.00049 0.028 14.6 6.9 1 23 780 803 780 803 0.98 27 43 0.0068 0.38 11.0 0.1 1 23 810 837 810 837 0.93 28 43 5.1e-05 0.0029 17.7 0.8 1 23 841 863 841 863 0.96 29 43 7.5e-05 0.0042 17.1 1.0 1 23 873 896 873 896 0.97 30 43 0.043 2.4 8.5 1.4 1 23 910 933 910 933 0.93 31 43 0.0014 0.081 13.1 3.3 1 23 939 961 939 961 0.98 32 43 0.0017 0.093 12.9 1.3 2 23 963 984 962 984 0.97 33 43 2.3e-05 0.0013 18.8 0.6 2 23 991 1013 988 1013 0.89 34 43 1.7e-05 0.00094 19.2 0.9 1 23 1017 1039 1017 1039 0.95 35 43 2.6e-05 0.0015 18.6 0.7 1 23 1049 1072 1049 1072 0.96 36 43 0.088 4.9 7.5 2.1 1 23 1078 1100 1078 1100 0.96 37 43 1.4e-06 7.8e-05 22.6 0.7 2 23 1107 1128 1107 1128 0.97 38 43 5.6e-06 0.00032 20.7 0.8 1 23 1134 1157 1134 1157 0.98 39 43 0.00057 0.032 14.4 1.1 1 23 1161 1183 1161 1183 0.95 40 43 0.00017 0.0093 16.1 5.3 1 23 1193 1216 1193 1216 0.96 41 43 0.0099 0.56 10.5 1.5 1 23 1223 1245 1223 1245 0.97 42 43 3.9e-06 0.00022 21.2 1.2 2 23 1252 1273 1251 1273 0.97 43 43 3.4e-05 0.0019 18.2 0.8 1 19 1279 1297 1279 1297 0.98
Sequence Information
- Coding Sequence
- ATGAAACTTGACGAATGTCCATTCTGTTTGAAATCGTTTcgtaaaaaacaattaaaatcccATTTAATTTCCCATACTGATCATCGACCATACCAATGTGATAAATGtggtaaatcatttaaacGGAAATATACCAAAGATCATCATAGCTGTACTTATGATCCTAGATATGAGTGTGATATATGCCATAAGAAACTTGGCAATCCCTGCAGTTTAGAGAATCATCGTCGTCGTCATTTACAAGATTATAAAATCACTTGTGAATTATGTGGAAGCGGTTGTATGTCACAAGCTGAATTAAGGCAACATATAGAAAggaaacataataaaaatgataaacggCGAAATAGACCAAAGGAGATCTCTTATctttgtaatgtttgtggtATATCATTGACTGGTGGTAGTACTTCATTACAACATCATTTGAAGCGACACGAAACGAACTATAcggaaaatcgtaattttaaatgtgaattttgtgAGAAAGCTTTCATGCAAGAATTACATTTGACAAAACATATCAAACGGATGCACAATGATAATCGTCCTAAATATATTTGTGATTTATGTGGAAAAGAGGTGACATCATCAAATAGTTTACAATTCCATAAGAACGTTCATAATGGCATCAAACTGAAAGAATGTAAAATATGTGGGAAAAAATTCAATCGTCAAAATACATTAGTGGCACATTTACGTACACATTCCGGTGAAAAGCCATatagttgtaaattttgtaataaatcattttcacAACAATCACCATTGGCAATACATATGAGACATCATACAGGAGAGAAACCGATACAAAAGACTGTCAAGAAGAAATTACAGAAACCCGCTCAATGTCCATGTTGTTCGAAATTCATCAGTAAATCGAATATGAAACGTCATTTAACTTCACATTCCGATTATCGACCATTCTCATGTGAAAAATGTAGCAAAACATTCAAAcgaaaatattcattaattgtccataattgtatttataattatacgTTGAAACATGAATGTAATATTTGCCATAAGAAACTCAATTATAAAGTTACATGTAGTATATGTGGATGTGGTTGTATGTCGAATGCTGAATTGAAGCAACATATTGAAAGGAAGCATAACGATAAACTTGAAGAACCATCATatctttgtaatatttgtggtAAATCGTGTACTAGTAAGCCGTCATTGGCTTGCCATATGAAACGTCATGAAGATAATTATACAGAGAAACGTAAttataaatgtgaattttgtaaaaaatcattCTTACAAATGATCTATTTACGTACACATATTCGACGGATGCATAACGATAATCGTCGTCGATACAATTGTGATTTGTGTGGTAAAGAATTAGCAAGCCGTCATAGTTTCCAATTACATAGAAATGTACATGAAGGTATTAAAACGATCGAATGTGAATTGTGTGGTAGAAGATTCAATCGTAAAAGTACATTAGTTGAACATTTACGTACACATTCCGGTGAAAGACcgtatatttgtaaatattgtgatAAATCATTCTCACAAAGAACACCAATGGTGATCCATATGAGACATCACACTGGCGAACATCCATATCCATGTGATAGTTGTGATGCGAAATTTGTTAGTAAAAGTGGACTTTCTCTTCATTTGAAGACTCATTTATATGTCCATACTGATCAACGGCCGTACACTTGTGAACAATGTGGAGtgaaatttaaacaagaaCAAACATTGAAGGAACACTATCTTAAACATGACCAGAATATATTGTATAAATGTACAATTTGTtcgaaaacattaaaatcagcTTATGGTTTGAAAACGCATCTTCAACACCACTCAAAGGAATATAACATATTTTGTGAAATATGTGGACGTGGCTTTGTCTGTAATAGTGCTTATCGGATTCATAAATCCGATGTTCATGATAAATCTAATctttgtaatgtttgtggtGAATCATTGAGTAGTAGTTCTGCAttgaaattacatttaaaaagaCATGAAGAGAATTACACAGAGAAGcgtaattttaaatgtgaattttgtacaaaaacatTTATGCAACATTTACATTTAAGAAAACATATGAAACGGATGCATAATGAGAATCGTCCAAAATATATTTGTGATTTATGTGGCAAAGAAGTAACAACTATAGGTGGTTTGAAAGCTCATAAAGATGTTCATTTTGGCTTTGTGACAACAGGTCTTTGTAAACGTCATGTAGAACATGTACATAATAATAGATTTCTATGTAACGTTTGTGGTAAACTTTTAATTAGTAAGAACATGTTTGAAATACATATGAAAACACATGAAGAAGGTTATGATGAAAAACGTGATTTTAAATGTGAATTCTGTTCAAAAACTTTTAGACAGAAACGCCACATATATCGACACATTAAACGCAATCATACTCAAAATCGTACGGAATATGTTTGTGAAGTGTGTGGTAAAAAATTAGCTACCCGCTTTGTGACAGCAGGTTATCTTAGACGACATTTACAAGATGCTCATAATGACGGATTCctttgtaatgtttgtggtAAAAATTTAGTGAATAAATACAGCCTACAAATACATACGAAAACACATGAAGACGGATATGTTGATAAAAGGGAATATATATGCGAATTCTGTTCAAAAGCATTTACACAGGAAATTTATTTACGTAATCACGTTAGGAagaatcataataaaaatggtcCTAAaACGAATATTAATCGGAAAGGTCATGAGTGTCCTTATTGCAAGAAGGTTTATCAAATTAGATGGTATTGGCTACAGCATATGGTGAAAAAACATGAAGAACATCGACCATATTGCTGTGAGATTTGTAAGGGAACATTTAAACGTCGAGAAGAATATAAAGCACACAAAGAAACACATAAGGAGTGTCATGTTTGTCAGAAACAGTTTGAAAGCTTTTGGATGTTAGCACTTCATATTCGTAatcatttggaaaattataaatgtttttgtgaaatttgtggAAAAGGTTTTGTGACAGCGGGTTATCTTAATGATCATTTGAAAATACTACATAATAATGGATTCctttgtaatgtttgtggtAAACAACTAAAGAACGAATACAACTTAAAAAAGCATTTGATAACGCATGAAGACGGTCATTTAGATAAACGGGAATTCATCTGTGAGTACTGTTCAAAAGCTTTTGcacagaaaatttatttacgtCAACACATTAGCAGGAGTCATAAAAATATTCGTAAGCATGTTTGTGATGTGTGTGGTAAAAATTTAGCTACCCGTATATCCTTAGAGTGCCACAAGAACACCCATGAAGGTATAAAACCAAACGTATGTAATTACTGTGGCCGAAAATTCAATCGACCTCAGACTTTAAAAGATCATATTATGACGCATACTGGTGAAAAGccttttaaatgtaaatattgcaataaaGGCTTTGTGACACCAGGTTATCTTAACGGTCATTTGAAAAAAGTACATAATGATGGATTCCTTTGTAATATATGTGGAAAACatttgatacaacaacaaatgtttGAAATGCATATGAGAGCACACGAAAAGGATTATGATGAGAAGCGTGattttaaatgtgaattttgttCAAAGACTTTTAGAGAGAAACGCCATTTATATCGCCATATTAAAGGGAATCATGATGAAAATCGGCCTAATTATATTTGTGATGTGTGTGGTAAAAAATTAGCTACGCGAGTTTCCTTACAATGCCACAAGAACACCCATGAAGGTGTAAAACCAAAGGAATGTAATTACTGTGGTAGAAAATTCAATCGACCGCAAACTTTAAAAGATCATCTTCTAACGCATACCGGAGAACAACCTTTCAAATGTACTTATTGCAATAAAGGTTTTTCTCAACGATCTGCATTAACTATTCAT
- Protein Sequence
- MKLDECPFCLKSFRKKQLKSHLISHTDHRPYQCDKCGKSFKRKYTKDHHSCTYDPRYECDICHKKLGNPCSLENHRRRHLQDYKITCELCGSGCMSQAELRQHIERKHNKNDKRRNRPKEISYLCNVCGISLTGGSTSLQHHLKRHETNYTENRNFKCEFCEKAFMQELHLTKHIKRMHNDNRPKYICDLCGKEVTSSNSLQFHKNVHNGIKLKECKICGKKFNRQNTLVAHLRTHSGEKPYSCKFCNKSFSQQSPLAIHMRHHTGEKPIQKTVKKKLQKPAQCPCCSKFISKSNMKRHLTSHSDYRPFSCEKCSKTFKRKYSLIVHNCIYNYTLKHECNICHKKLNYKVTCSICGCGCMSNAELKQHIERKHNDKLEEPSYLCNICGKSCTSKPSLACHMKRHEDNYTEKRNYKCEFCKKSFLQMIYLRTHIRRMHNDNRRRYNCDLCGKELASRHSFQLHRNVHEGIKTIECELCGRRFNRKSTLVEHLRTHSGERPYICKYCDKSFSQRTPMVIHMRHHTGEHPYPCDSCDAKFVSKSGLSLHLKTHLYVHTDQRPYTCEQCGVKFKQEQTLKEHYLKHDQNILYKCTICSKTLKSAYGLKTHLQHHSKEYNIFCEICGRGFVCNSAYRIHKSDVHDKSNLCNVCGESLSSSSALKLHLKRHEENYTEKRNFKCEFCTKTFMQHLHLRKHMKRMHNENRPKYICDLCGKEVTTIGGLKAHKDVHFGFVTTGLCKRHVEHVHNNRFLCNVCGKLLISKNMFEIHMKTHEEGYDEKRDFKCEFCSKTFRQKRHIYRHIKRNHTQNRTEYVCEVCGKKLATRFVTAGYLRRHLQDAHNDGFLCNVCGKNLVNKYSLQIHTKTHEDGYVDKREYICEFCSKAFTQEIYLRNHVRKNHNKNGPKTNINRKGHECPYCKKVYQIRWYWLQHMVKKHEEHRPYCCEICKGTFKRREEYKAHKETHKECHVCQKQFESFWMLALHIRNHLENYKCFCEICGKGFVTAGYLNDHLKILHNNGFLCNVCGKQLKNEYNLKKHLITHEDGHLDKREFICEYCSKAFAQKIYLRQHISRSHKNIRKHVCDVCGKNLATRISLECHKNTHEGIKPNVCNYCGRKFNRPQTLKDHIMTHTGEKPFKCKYCNKGFVTPGYLNGHLKKVHNDGFLCNICGKHLIQQQMFEMHMRAHEKDYDEKRDFKCEFCSKTFREKRHLYRHIKGNHDENRPNYICDVCGKKLATRVSLQCHKNTHEGVKPKECNYCGRKFNRPQTLKDHLLTHTGEQPFKCTYCNKGFSQRSALTIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -