Ltri004335.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- -
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000546.1:34700-37921[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.13 1.4e+02 2.3 0.2 32 42 163 173 151 173 0.76 2 9 0.74 7.5e+02 -0.1 0.7 33 44 194 205 177 209 0.79 3 9 0.001 1 9.1 0.1 18 30 215 228 212 238 0.78 4 9 0.0021 2.2 8.1 1.0 11 31 247 267 244 273 0.78 5 9 0.00013 0.13 12.0 2.8 5 36 270 301 267 304 0.73 6 9 0.042 43 3.9 0.9 12 39 304 337 301 346 0.75 7 9 0.069 70 3.2 0.6 17 29 349 361 339 368 0.80 8 9 0.0013 1.4 8.7 2.4 13 38 373 399 366 400 0.80 9 9 0.00048 0.49 10.1 0.3 18 43 406 428 403 429 0.92
Sequence Information
- Coding Sequence
- ATGTGTCCACCCCTGGATTTGCCCAATTATACTGATAGTACTGATACTGAAATACTTAATGAAAATGGTATAAATTATAGTCATATTGATGAAGATATTTGTGATGTTCCTAATAGCAAACTCCTACAATTAGTTGAAGAGGTTGAAGCGGATAATGGCAATGATCATCAAAGATCTTGTTCACCTATTGAGTTAAGAAGTGAAGATTTTGCTTTAGTTGAAGAAGCcaaagaaattgatgatgaacaCGATAAAACGATTAGTGATGATCATCAAGCGATTATTAATGatcaaaatgaaacaaatatcAACGAAGACTTTACAGATAATACAGATACAGTTGGTGATAGCATTGTTAACAATGACAATAGTATTACAACTGATAATGGGAATCATAGTGATGATGACCAAAACGGGAGAAATTGCATTGAGGCAACAGTTGAcgataatcgaaaatttctaaattctgACAATAGTTCTACTGATAAATCCAATTTAGGCAGACATTTAAGATCAAAtactattgaaaatcaatgtaatgtttataatcaaacattCACAACTCGATTCACTTATcgtaaacatttaaaacaacatctaCAACCTGTTCACAGGAAAGTACATACAGGTGTAGAACTATTCAAATGTAACATTTGTAATCAAACATTTTCACGGAAAGATCTATTACAAATTCATCTACGACAGCATACTGCTGATAACCAAAATGATCGTCAATTGAGTGTAGATTTGAAATCTTATCAGTGTgacatttgtaataaaaaattttcacaaaGAGGTAATCTAATTTGTCATTGGAGGATACATACCGGTGAAAAACCATTTAAATGTAACATTTGTAATAAAGCATTTTCACAGAAAGGTAATCTAGTTACCCATATGAGGGTACATCGAATTGagaaatcatttaaatgtaataGTTGTGATGAAAAATTTCCACGAAGAGATCTATTAAGAATACATTTAAGAGTGCATACTGTTGAGAAACATTTAAATGGACATGTAATTGTTGCACATAGTGATGAGTATAAATGTACgatttgtgaaaaattatttacaaataaacgtCAATTGAGTATACATTCAAAGGTACACTCGAAATCATCTTATTATCAATGTGGTATTTGTGAAAAAacgtttttgtataaaaacagTTTAACAACTCACATGAAAATACATACAGGTGTAAAACCATATCattgtaatatttgtggtAAAAATTTTCCAGAAAGGTATACTTTTCGATATCATTTAAAACGGGATCATGATAAAGAGGATcttcaatga
- Protein Sequence
- MCPPLDLPNYTDSTDTEILNENGINYSHIDEDICDVPNSKLLQLVEEVEADNGNDHQRSCSPIELRSEDFALVEEAKEIDDEHDKTISDDHQAIINDQNETNINEDFTDNTDTVGDSIVNNDNSITTDNGNHSDDDQNGRNCIEATVDDNRKFLNSDNSSTDKSNLGRHLRSNTIENQCNVYNQTFTTRFTYRKHLKQHLQPVHRKVHTGVELFKCNICNQTFSRKDLLQIHLRQHTADNQNDRQLSVDLKSYQCDICNKKFSQRGNLICHWRIHTGEKPFKCNICNKAFSQKGNLVTHMRVHRIEKSFKCNSCDEKFPRRDLLRIHLRVHTVEKHLNGHVIVAHSDEYKCTICEKLFTNKRQLSIHSKVHSKSSYYQCGICEKTFLYKNSLTTHMKIHTGVKPYHCNICGKNFPERYTFRYHLKRDHDKEDLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00929805;
- 90% Identity
- iTF_00929805;
- 80% Identity
- iTF_00929805;