Lpor002382.1
Basic Information
- Insect
- Lycophotia porphyrea
- Gene Symbol
- TY3B-G
- Assembly
- GCA_950005105.1
- Location
- OX465384.1:18057418-18066932[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.061 5.1 8.5 1.4 3 23 1141 1162 1139 1162 0.91 2 8 0.00016 0.013 16.6 1.2 2 23 1171 1192 1170 1192 0.97 3 8 0.011 0.92 10.8 0.0 2 23 1199 1220 1198 1220 0.96 4 8 0.0051 0.42 11.9 2.3 1 23 1228 1251 1228 1251 0.95 5 8 1.9e-05 0.0016 19.5 0.6 1 23 1256 1278 1256 1278 0.97 6 8 0.00036 0.03 15.5 2.6 1 23 1284 1306 1284 1306 0.98 7 8 0.00019 0.016 16.4 0.6 1 23 1312 1334 1312 1334 0.98 8 8 1.1e-05 0.00092 20.3 4.3 1 23 1340 1362 1340 1362 0.98
Sequence Information
- Coding Sequence
- ATGGAGCGTAAATTAGTGAAATTTCATGAGTTCAATGTGAAAACAGACAATTGGGACAGTTACGTAACTCGACTCAATTATTGCTTTGAAGCTAGTGGAATCGTTCTCGATTCGATCAAAAAAGCTAACTTTTTTACGATTTGTGGTGCTCAGACTTTCGATACTGTTCTTGCATTAATCACTCCAAAAAATTCAAGTGAAGTGACTTATACGGAAGTTATAGATGTGTTGACCAAACATTATAGTCCAAAACCAAATGAAATATCAATGTCATACAAATTTTACCATCGTGATCAAACAAAGGACGAGACAGCGACGGAATATATCGCTCAGTTAAGAAAAATCAGTACGAACTGTAATTTTCCAAATCTGGAACGCATGTTGCGGGACAGATTGGTGTGTGGCATGAGTGATCGCAAACTGCAGTACGAGCTGTTGAAGAAAGACAATCTCGAGTACAAGGACGTCGTTGACGCCATGGTGTCTGCCGAGTCCGCGGGGAGGGACGCGCGCATGATGCAACAAGCCGAGCGCGCGGCCACGCTGGCACACGCCGataccgccgccgcgccgcctccGCCTGAGCCGATGGATGTCAACGCGTTAAAAACTAAGACAAACATTCGTCTTTGCTACAGATGTGGTGATCGTCACGGTGGTGAATGTCGTTTTATCAATGCAGTTTGTCATTTTTGCAAGAAAAAGGGTCATATCGAGAAAATCTGCACAGCTAAAAAGAAAAGTACCTCAGGAAAAGTAAACCACGCTGAAGAGGTGCAGTCTGACGCGCAGCTGAACGGGATTTACAAAGTGGAGTGCGCGAACACGCGCGTTCCTGCTTACAAGCTACGCGTGTTGCTGAACGACGTGCCGGTGGACATGGAAGTGGACTCGGGCGCCGCTTTCTCACTGGTCAACGAGCGCACGTGGGCGCGCCTACaaccgcgcgccgccgccgcgccgcgtcCCATGCACACTCGGCTGCGCACTTGGAACAACTCGCAGGTTTCGGTCATTGGACAAGCAATGGTCTCGGTCATGTATAAGGACATTAAAACTGAATTATACGTAATAGTGGCTAGAGGTTCAGGGCCAAACTTATTGGGACGTGATTGGTTTGAGCCCCTCGAAATTTCTATaaagttgaataaaattttagatATTGATTTGTCAGCAACGAATGCATTATTAACCAAGTATGGGGAGGTTTTCAAGGACGAACTCGGTACTTACCGCGGAGACCCGGTCGCGATTCATTTGAAACCAAATGCAACGCCTAAGTTTTTGAAAGCTAGACCGGTACCGTTCGCTATTAAAGCTAGGGTTGAACAAGAGATAGATCGATTGGTAGGTGAAAATGTTTTGCAACCCGTATCATATTCAGAATGGGCCACTCCGGTAGtcccaataataaaaaagaacggTGCGGTCCGTCTGTGCGGCGATTATCGTAGTACGGTGAATCAGGCTACGGAAACCGATACTTACCCGATGCCTACAGCTAGTGAAATTTTCGCAATTATATCTGGAGGAAAATTTTATACGACATTAGACCTTGATCGCGCATACACACAAGTGGTCGTTACAGAAGACACGTCCCGCCTTTTAACACTAAACACATGCAAGGGTCTTTACACTGTACATAGCGGCTGCACCATGGCAGAGATGACGCAGCGTCTAGATACAGTATTAGGACGTATTGAGAAGGCAGGTTTACGACTTAATAAGGACAAATGTAAATTCGCTAAGGAGCGAGTGGAATTTCTGGGTTTTGTTATCGATGCTGACGGGATTCACCCGGCACCGAGTAAGATTGAGTCCATACTCAATACTCCAGAACCTAAAAATGTGCAACAATTACAAGCATTTCTTGGTTTATATAACTTTTATGAGAGGTTCGTACCCCATAAGGCCACGATATTAGAGCCTCTACATAGATTGCTCGACAAATCGCAGAAGTGGGTGTGGACTGACCGAGAGCAGGCTAGTTTCAATACTGCTAAGCGTTTACTATCTTCTGATCTCACACTTGTACACTATGACTTGAACAAGCCACTGGTCCTCATCTGTGACAGTTCAGAGTACGGAGTGGGAGCTGTTTTGTCCCACATCGTGGAAGACGGACATGAGCGTCCTATTGCCATGGGCTCTAGGACATTGCATTCGCACGAGCGTCGTTACTCGCAACTTGATAAAGAAGCGACTGCTATAATTTTTGGGATAAATAAATTCCAGAATTACTTAATGGGTAGGTCTTTTACGATAGTTACGGACCATAAACCATTGTTAGAAATTTTTGATCCCAAAAAGCCCATACCTCATGTTTTATCACCACGCTTGACACGAATAGCTTTAATATTAACTTCCTATAGTTACGACATTATACATAAACCAGGAACACAGATAGGTCATGCTGATGGACTGAGTCGCTGGCCGCAGCCTGTCCCTGAACAAGCTGAACCACAGCTCTGTGACATACTGCTGATGGCCGAGGCCCCTGATGACTTTCCGATTGATGTAGACAAAATAGCACACGCTACAAAACAGGATAACGTTCTTAATCGAGTAAGTCATCACATTCTATGCGGTTGGCCAGCCAAAATATCAGATGATCAGCTACGTCCATACTGGCTGCATCGGGCTGAGTTGTCGTTGCATGAGGACTGCGTTCTCCTAGGCTGCCGCGTAGTAGTACCTCCGCCGCTTCGTGAAGCAGTGCTGCATGCTCTTCACAAAACGCACAGTGGCATTGTTCAAACTAAATCACTCGCCAGAAGTTATGTTTGGTGGCCACAGTTAAATGACGACATTGAGACTTTGGTACAGAACTGCAATAAATGTTCTGAAAACCGGCATATGCCACCAAAAACTAGTTATGAGTGGGTGATGCCAGTGAAGCCTTGGTCTAGACGGATCCGCACATTGTTAGACACTATTAATCCACATGATCAGAAACGTAAAAGGAGGGAAAATCAAATCGTAAGAAATAGTCAAAAgaagaacagacagacagatgtagGGCAGAAGGTTATGTACAGGAATTTTAGTAGTGGACCTCGTTGGTTACCAGGTACTGTAGTAAACAAAGACGGTCCAGCCAGTTATCGAGTTGAAACTGGAGATGGAACGGTAGTCAGTAGGCATATAGACCAGTTAGTCAGACAACAGAATGTACTAAATGCCGGAAGACAGATTGCTAATGAGGAATTAGGCCAGACTGATGAAAGGGATACGGTAGAACAAAGTAATGGGGAAAGACAATATCAGGAAATGGATCAGGATCAATCGGATATACAGGAAAGTGAGCAAATTATAGAAATACCCAGTTCAGACAAATGGGCTGAAATGTTAGGTATTCCATTGGAGTCAGAACCTAGTTCTTCAGGCGGTAAAATTAGGAATAAACTTGTAACAATCCACTGCTCACCGTGCAACAAAACCTTTTTGACATGGAGTGGTCTGAAACGTCACAAAGAGAGTGAACATACTCAAGTAAGCTTAGAAAGTCTGAAGTGTCCTGTTTGTAGGAAGATCTTCAAGAGCCGACAGACGCTGAAGATGCATGAGAAGGTGCACGGGAACAGGAGGTTGATCATGTGCGATGTATGCGGGAGAGGACTCACATCTGCTGTTGTGTTGAggGCTCACTTAGAAACACACAAAGAGAACAGAGAACGACGTTTCACTTGCGATCAGTGTGGAAAGAAGTTTTTCACTAAAACGATACTACAATCACATGTGTCAAGGCGCCATTCAGGCCGCAAGTTCATATGTCAAGTATGCTCGTACAATTTCACCGATAAATACAACTTGGCCAAACACTTGCTCATACATGAAGGGCATAAGTTATACAAATGTGACATTTGTAACAATTCCTATGCCACACATTCGACGTTAACAGAACATAAGCGCCTCCATTCTGGTGAGAAGCCCTATGTATGCAATTATTGTCTAAAGCCGTTTGTTTCAAGGAAAAGACTGACTGATCATGTAAGGATACATACTGGTGATAAGCCGCATAAATGCACGATGTGTGAACAGAGGTTCACGCAAAGAGGGACTTTAAAGAGGCATATGAAAGTGCATGATAGGGCTGCGCCGACACTTAGTTGA
- Protein Sequence
- MERKLVKFHEFNVKTDNWDSYVTRLNYCFEASGIVLDSIKKANFFTICGAQTFDTVLALITPKNSSEVTYTEVIDVLTKHYSPKPNEISMSYKFYHRDQTKDETATEYIAQLRKISTNCNFPNLERMLRDRLVCGMSDRKLQYELLKKDNLEYKDVVDAMVSAESAGRDARMMQQAERAATLAHADTAAAPPPPEPMDVNALKTKTNIRLCYRCGDRHGGECRFINAVCHFCKKKGHIEKICTAKKKSTSGKVNHAEEVQSDAQLNGIYKVECANTRVPAYKLRVLLNDVPVDMEVDSGAAFSLVNERTWARLQPRAAAAPRPMHTRLRTWNNSQVSVIGQAMVSVMYKDIKTELYVIVARGSGPNLLGRDWFEPLEISIKLNKILDIDLSATNALLTKYGEVFKDELGTYRGDPVAIHLKPNATPKFLKARPVPFAIKARVEQEIDRLVGENVLQPVSYSEWATPVVPIIKKNGAVRLCGDYRSTVNQATETDTYPMPTASEIFAIISGGKFYTTLDLDRAYTQVVVTEDTSRLLTLNTCKGLYTVHSGCTMAEMTQRLDTVLGRIEKAGLRLNKDKCKFAKERVEFLGFVIDADGIHPAPSKIESILNTPEPKNVQQLQAFLGLYNFYERFVPHKATILEPLHRLLDKSQKWVWTDREQASFNTAKRLLSSDLTLVHYDLNKPLVLICDSSEYGVGAVLSHIVEDGHERPIAMGSRTLHSHERRYSQLDKEATAIIFGINKFQNYLMGRSFTIVTDHKPLLEIFDPKKPIPHVLSPRLTRIALILTSYSYDIIHKPGTQIGHADGLSRWPQPVPEQAEPQLCDILLMAEAPDDFPIDVDKIAHATKQDNVLNRVSHHILCGWPAKISDDQLRPYWLHRAELSLHEDCVLLGCRVVVPPPLREAVLHALHKTHSGIVQTKSLARSYVWWPQLNDDIETLVQNCNKCSENRHMPPKTSYEWVMPVKPWSRRIRTLLDTINPHDQKRKRRENQIVRNSQKKNRQTDVGQKVMYRNFSSGPRWLPGTVVNKDGPASYRVETGDGTVVSRHIDQLVRQQNVLNAGRQIANEELGQTDERDTVEQSNGERQYQEMDQDQSDIQESEQIIEIPSSDKWAEMLGIPLESEPSSSGGKIRNKLVTIHCSPCNKTFLTWSGLKRHKESEHTQVSLESLKCPVCRKIFKSRQTLKMHEKVHGNRRLIMCDVCGRGLTSAVVLRAHLETHKENRERRFTCDQCGKKFFTKTILQSHVSRRHSGRKFICQVCSYNFTDKYNLAKHLLIHEGHKLYKCDICNNSYATHSTLTEHKRLHSGEKPYVCNYCLKPFVSRKRLTDHVRIHTGDKPHKCTMCEQRFTQRGTLKRHMKVHDRAAPTLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -