Lpor026086.1
Basic Information
- Insect
- Lycophotia porphyrea
- Gene Symbol
- -
- Assembly
- GCA_950005105.1
- Location
- OX465412.1:3935197-3977976[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0024 0.2 12.9 0.8 1 23 544 566 544 566 0.98 2 10 0.036 3 9.2 3.0 2 23 574 596 573 596 0.97 3 10 0.0013 0.11 13.7 0.9 1 23 627 650 627 650 0.97 4 10 0.0069 0.58 11.5 1.0 2 23 655 677 654 677 0.95 5 10 0.81 67 4.9 1.2 3 21 691 709 690 714 0.93 6 10 4.9 4.1e+02 2.5 0.1 2 23 762 784 761 784 0.89 7 10 0.53 44 5.5 2.2 1 10 799 808 799 821 0.80 8 10 1.6e-06 0.00013 22.9 1.7 1 23 827 849 827 849 0.98 9 10 4.7e-06 0.00039 21.4 3.6 1 23 856 878 856 878 0.97 10 10 9.2e-05 0.0077 17.4 0.7 1 23 884 907 884 907 0.92
Sequence Information
- Coding Sequence
- ATGAATGGTCCGTCTAGCCTGTCGGCGACGACGGCGAGGAGACCGTTGCTGCTGCCCCTCACTCTGCCCACTATCGAGGCTGCCCTCCTGCACACGTATAGTGGCATAAAAACAGTCTACGCGCACATTGGCGAACATCCCCGACGCGCTACAGAAGCGAGGCAGCCACAGCAACGCCCTCAGCGCGTTATTATATTGAACTCGGAGGGCACCGTAGACTTTCTGCGAtGCACAAGTTTTGCTCTGTGCGCTATTTCCTCTGTGGCGTCACGTGCAATATGTTTGTCAGAGTGGTTACCGAACGAGGTGCTAATGCTTAGACAAACTGTCAGCACTCCGGCACACGGGAGCCCAGAACAGTACCTACGCCTGAGGGCACAAAGAATTAGCGAATTTCCAAAAGACCCGAAACAGCGTGAAACATGGCTGAGATCCCTTGGAATACCAAACATGATACCGACAAATCGAACAGTGATTTGCTCCGACCATTTCAAAGAAGACGATTTTTACTTCACTCAGAACGAGACCAGAAGGATCAAGCAGGGTGTGGTGCCATTTATTGAGATCTGCAAACTATGCCTGTCATTGGACGTCAAGATGTACCAAATAAAAGATCATGGTTTGGACAAAATGTATCAAGATATCATGGGAATACCGCCAAGAATAGACGCCCAGAACAGACTCCCAATGGGTATATGTTGGGAGTGCACCGCGCGACTGCAGTCAGCCTCTGCATTCAGATCTAAAGCGCTTTTCAGCGATGCATTGCTTGAAAATCACCTGAAGAACAACCCTTATcTAAGTATCATCGATATACAAAACATACATGAACaacaaactaatttaaaatCTACGCTGGCAATACAAGAAGTATTTAGATTTAACAGCAATAATGTCGAAGAACACGCTCCAAACACTTTTGTCAAAACTGAAGTCCTAGGCATACCTAACAACGAAGAAATTGAGATTGATGTACAGCATTTAGTAACAGAGAAAATCACTATCAAAGATGAACGAAAACATGACGTCATCATAGAGAATTTACaaaacactgattttaaaaCCGAAGTCGACCTTATACCTAACACTGATATCGAAATTGGGGACGAAGACGCGAGTTTTGATGGTAACTTtagtgataatgataatgttgAAACAGTCACAGAAAACGTTTACGTCAACGAAACGAGAAAAGATTTTGAAGAAGTCTTGAAAAATGAgaaagaaatagaaaaagatCATTTTGCGGCGAATCTCTCCGAAATCATGCAGACCAACgatgatgaattgatgaatTTGGCTAAGAATCTAACAAGtgaagatgaagatgatgatattgatgatgAAAAGAGTAATGCTTCCGATGATGGAGGTATTCAAATAAACCTCACGAATAAAACTGTTAGGTGTGTTAAAGTTAAATCTGAtgaaaggaaaaagaaaaaggcAAAAGACGGTGATGAAGGTCTTATTATTTGGGTGAAAGGAAGAGCAAAGAAGAAACAGCCTTACGTCAAACCTTGTATGCCAATAGACGAGAACATTTTCTCTGTGATAATGTTGAACCACGATGATTTGAGGCGAGAGATACTCGCGAGACGAGATTCCGTTAAGTACATAAACGCgtcttacaagtgtgatgtgtGCTTCAGGGGATTTCCGACCAACGATAAGAAGGAAAGGCATGTGATTAAACATAGTGAGAAAAGCGGTCcaataaaatgtaacatatGTCATGTTCGTATGAAGAAAACGAGAGATTTGCGCGCGCATATGAAAAGACAACACACCATGGAGTTTATATGTAAACTGTGTCCCATGGTGACTAGGATTCGGAACGTCGCATTAGGACACATGAAGTACCACGCTGGTAACAAATATGAGTGCCCGCAGTGTTTCATTCAGTTCGAGAAACAAACAACGTTACTAAATCATCTTCGACTGAAGCACATGTCAGCGTGTGTCTGTGAACTCTGTGGCTACACGTTCGTGAGTAAGAATGGCGTTGATGTACACAAGCGAATGAAGCATAAGCTATTTGAtgtaaataGTGTATTCAAAGGTCCTCACTGTGAAGTCTGCGACGTGAAGTTCTTGACGGAAAAGGCGTATAACAGACATTTAAGGTTGTCGTCTAAACATATCACTGAGGATGACCCTAACCGCATAAGCAACGACCCCTCGATCAAGCAGCGGCGTGTCGGCACATCAACTTGGCACAGCGTCAGAAGACCAGTTATACACCGTAAGAACGAAAGCACACCAGCCCCTAATGGTCCTGTGACTTGTGAGCAGTGTGGCGTAGTACTAGAAAGTCTCCGGGTATACGCCTCCCACTTCAGGTACGCTCACCCGGGCGTCAACCGCACACAGTTCACGTACTCGTCCACGCCTTATATGTGCGAGCATTGCGGGAAGTTCTTCCTGAACACAACCACTCTATCATGTCACATGTGGGTGCACACCGGCCAAAAACTCTTCAAATGCGACCACTGCAACAAAGCGTTCAGCATGAAAGCGAACCTCGCGGGTCACATGCGCCAACACGAAGGCACCCGACGCACGTACGACTGTCGCGTGTGCGGCAAACACTTCACCTTCAGCTACAACCTCACCAGGCATATGTCCCTACACACGGGCCTAAGGCCGTTCAAATGCGACGCTTGCGAAAAAACGTTTCGTACATCAGGAGAGCTGCGCGCTCATGTGGACCATGTGCACTTGAAGAAACCACGACCTAAGCGAGTTAGACGCAAGGCGAACAAGTGTGAGCTGACCACCTTAGAGTATGagtaa
- Protein Sequence
- MNGPSSLSATTARRPLLLPLTLPTIEAALLHTYSGIKTVYAHIGEHPRRATEARQPQQRPQRVIILNSEGTVDFLRCTSFALCAISSVASRAICLSEWLPNEVLMLRQTVSTPAHGSPEQYLRLRAQRISEFPKDPKQRETWLRSLGIPNMIPTNRTVICSDHFKEDDFYFTQNETRRIKQGVVPFIEICKLCLSLDVKMYQIKDHGLDKMYQDIMGIPPRIDAQNRLPMGICWECTARLQSASAFRSKALFSDALLENHLKNNPYLSIIDIQNIHEQQTNLKSTLAIQEVFRFNSNNVEEHAPNTFVKTEVLGIPNNEEIEIDVQHLVTEKITIKDERKHDVIIENLQNTDFKTEVDLIPNTDIEIGDEDASFDGNFSDNDNVETVTENVYVNETRKDFEEVLKNEKEIEKDHFAANLSEIMQTNDDELMNLAKNLTSEDEDDDIDDEKSNASDDGGIQINLTNKTVRCVKVKSDERKKKKAKDGDEGLIIWVKGRAKKKQPYVKPCMPIDENIFSVIMLNHDDLRREILARRDSVKYINASYKCDVCFRGFPTNDKKERHVIKHSEKSGPIKCNICHVRMKKTRDLRAHMKRQHTMEFICKLCPMVTRIRNVALGHMKYHAGNKYECPQCFIQFEKQTTLLNHLRLKHMSACVCELCGYTFVSKNGVDVHKRMKHKLFDVNSVFKGPHCEVCDVKFLTEKAYNRHLRLSSKHITEDDPNRISNDPSIKQRRVGTSTWHSVRRPVIHRKNESTPAPNGPVTCEQCGVVLESLRVYASHFRYAHPGVNRTQFTYSSTPYMCEHCGKFFLNTTTLSCHMWVHTGQKLFKCDHCNKAFSMKANLAGHMRQHEGTRRTYDCRVCGKHFTFSYNLTRHMSLHTGLRPFKCDACEKTFRTSGELRAHVDHVHLKKPRPKRVRRKANKCELTTLEYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00301578;
- 90% Identity
- iTF_00928794;
- 80% Identity
- iTF_00928794;