Basic Information

Insect: Lycophotia porphyrea
Gene Symbol: -
Assembly: GCA_950005105.1
Location: OX465395.1:3440707-3449357[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.2 96 4.5 1.5 1 23 274 296 274 296 0.93

2 11 0.0014 0.11 13.7 7.8 1 23 303 326 303 326 0.97

3 11 1e-05 0.00086 20.3 2.3 1 23 357 380 357 380 0.98

4 11 0.42 35 5.8 0.1 2 23 389 411 388 411 0.94

5 11 0.011 0.91 10.8 0.2 2 20 422 440 422 442 0.95

6 11 7e-05 0.0059 17.7 0.6 3 23 452 472 452 472 0.99

7 11 0.5 41 5.6 0.2 2 23 487 509 487 509 0.94

8 11 0.00021 0.018 16.2 6.8 1 23 526 548 526 548 0.99

9 11 5.7e-05 0.0048 18.0 0.7 1 23 554 576 554 576 0.98

10 11 4.2e-06 0.00035 21.6 2.7 1 23 582 604 582 604 0.98

11 11 0.00055 0.046 14.9 2.4 1 23 610 633 610 633 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.2	96	4.5	1.5	1	23	274	296	274	296	0.93
2	11	0.0014	0.11	13.7	7.8	1	23	303	326	303	326	0.97
3	11	1e-05	0.00086	20.3	2.3	1	23	357	380	357	380	0.98
4	11	0.42	35	5.8	0.1	2	23	389	411	388	411	0.94
5	11	0.011	0.91	10.8	0.2	2	20	422	440	422	442	0.95
6	11	7e-05	0.0059	17.7	0.6	3	23	452	472	452	472	0.99
7	11	0.5	41	5.6	0.2	2	23	487	509	487	509	0.94
8	11	0.00021	0.018	16.2	6.8	1	23	526	548	526	548	0.99
9	11	5.7e-05	0.0048	18.0	0.7	1	23	554	576	554	576	0.98
10	11	4.2e-06	0.00035	21.6	2.7	1	23	582	604	582	604	0.98
11	11	0.00055	0.046	14.9	2.4	1	23	610	633	610	633	0.96

Sequence Information

Coding Sequence: ATGGATGAATTAAAGTATTGCCGAGTATGTCTTGAGACTGATGTAAAGATGTTCAGCTTGGAAACTAAGTCGAGCGATTCCATCGGTGTAGTTTACTCACATCTGGCGCAGATTCCGATATTTGATAAGAATCAACATGTGTGTTTTGAATGTGCCAATCTCCTCTATAAATATCATGAGTTCAAGTCAAAATGTCTCAGAGCTCACAACATTTTATCTAGAATCAGAGTTGATTCATCACAGATAACAAGGCAAACCCTCAAAAATAttgatagaaaaataaataaattggaatcTACTTTGAAAATATCCCCTGTAGTTGTTGTTTTTGAAGAATGTACAAATAATCCAGAAactgaatttaatataattgaacagaaagaaaataaagaatctGAAATCAGTGTTAAAATTGAAGAAGTACATTACAAAGAAATAGAGAATTTTAATAACtgtgaaatacaaaataaatatgattataatGAAGGATCTACTGGACACTTCATTGATTCTTTGGAAGAGTCAGTGTCAGAAATAGTAGCATggccaaaacaaaaaattaagcataacaaaacaaacaaagaacCTAAAACTAAAAGAAGGAACGTTAAAAAGAGCGAGGGTGTTGATGATTTTAGTGATGATGAACCCTTATCAAAAAGGGCTACAAAGACGGTAATCACACAGCCCGTAAGAAAAAAGAACGGTTTCAATTTTAGTTACTTTGATGATTATGCAACAGTTGTGTTTATGACCCCTGAAGATGCCAGAAAGGAATTACTATTGAGAAAAGAGTCCAGTAACTATAAAACATCACCATTCAAGTGTGATTTATGCTACAGGGgatttgaattaaaaacaacATCTGAAAATCATGCAAAAAAACATAGCACTGAATATGGAGACTATGAATGTGATATCTGCCACATCAGGTTCCCTCAACAAGTGCACTTGTGCAAACATAGACTGTCATGTCATAAGAGAAAGTTTAGCTGTAAACTATGCTCATACATTTGTTATTGCACTGAACAAGCGAAATCTCATGTTAGTCTACACAAAGGAATGAAATATCCTTGTAAACACTGTGGAGAAATATTCAGCATGTCAAATAGCCTACAGATGCATTACCGTACGAAGCATTTGAAGGAGTCTGTATGCGAAAGTGTATGTGAGTTTTGTGGAGATATCTTTGGCACCCCAAAGGGACTATTCTTACATAACATGAAACTGCACAGGCAGGATAAAAATGACAAGCTTGGCCCCAAGTGTAGCGACTGCGGTGTACACTTCACAACAGAACTAGCGTGGAAGCGACACCTGGTGCTGTCTACTAAACATAAAGTCAGTAACGGTTGCAAATTCTGCGGAGACACATTTTCAAACGAAGATGATCTTAAGACTCACATACGAGTGCACTCACGACAAAACAAAAGATATACTAAAATCAAACTACCCGCCACATGTGCTATTTGCGACAGATGGCTCAAAACCCGCGAGGAGTATAAGGCTCACGTGACGTCAGAGCACCCGCACAGCGACGAGGCGGAGAAGTTCGTTGCGGATGTCGATACGCCTTACGTTTGCGAAGTTTGTGGACATATGTTCAAGAGACAATGCTTCTTAAAATACCACCAGCGGAAACACACGGGCGAGCGTCCCTTCAAGTGCCTCGAGTGCAATAAAACGTTCCGACTAGCCGGATCGTTGTCTATACACAGCCGTATGCACAGTCGGACGAGGCCACATAAGTGCGAGATGTGCGCACGTATGTTTACGTACAAAAGTGCCCTTAATAAGCATATGAagGTTCACCTCAATATCCGCCCCCACAAATGCGCGCTCTGCGACAAAGGCTTCATTAACCTGTGCGACTTAAAGCTGCACATCAAATATGTACACGACAAGGTACCTTGGCCTAAGAAGAAAAGTAAGAAGACTGTTATTGAAGATGAAGAATACTGA
Protein Sequence: MDELKYCRVCLETDVKMFSLETKSSDSIGVVYSHLAQIPIFDKNQHVCFECANLLYKYHEFKSKCLRAHNILSRIRVDSSQITRQTLKNIDRKINKLESTLKISPVVVVFEECTNNPETEFNIIEQKENKESEISVKIEEVHYKEIENFNNCEIQNKYDYNEGSTGHFIDSLEESVSEIVAWPKQKIKHNKTNKEPKTKRRNVKKSEGVDDFSDDEPLSKRATKTVITQPVRKKNGFNFSYFDDYATVVFMTPEDARKELLLRKESSNYKTSPFKCDLCYRGFELKTTSENHAKKHSTEYGDYECDICHIRFPQQVHLCKHRLSCHKRKFSCKLCSYICYCTEQAKSHVSLHKGMKYPCKHCGEIFSMSNSLQMHYRTKHLKESVCESVCEFCGDIFGTPKGLFLHNMKLHRQDKNDKLGPKCSDCGVHFTTELAWKRHLVLSTKHKVSNGCKFCGDTFSNEDDLKTHIRVHSRQNKRYTKIKLPATCAICDRWLKTREEYKAHVTSEHPHSDEAEKFVADVDTPYVCEVCGHMFKRQCFLKYHQRKHTGERPFKCLECNKTFRLAGSLSIHSRMHSRTRPHKCEMCARMFTYKSALNKHMKVHLNIRPHKCALCDKGFINLCDLKLHIKYVHDKVPWPKKKSKKTVIEDEEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01532442;
90% Identity: iTF_01063172;
80% Identity: -