Basic Information

Insect: Lycophotia porphyrea
Gene Symbol: -
Assembly: GCA_950005105.1
Location: OX465398.1:1960911-1965732[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0005 0.042 15.0 1.0 1 23 294 317 294 317 0.94

2 11 0.015 1.2 10.4 4.5 1 19 327 345 327 349 0.92

3 11 2.6e-05 0.0021 19.1 3.7 2 23 355 376 354 376 0.97

4 11 0.00032 0.027 15.6 0.6 1 23 380 403 380 403 0.94

5 11 0.0052 0.43 11.8 0.6 1 23 406 429 406 429 0.96

6 11 0.00093 0.077 14.2 0.4 2 23 502 523 501 523 0.96

7 11 0.06 5 8.5 0.3 2 23 543 565 542 565 0.96

8 11 1e-06 8.5e-05 23.5 4.1 1 23 571 593 571 593 0.98

9 11 0.0004 0.033 15.4 2.6 1 23 598 620 598 620 0.98

10 11 0.001 0.086 14.1 5.1 2 21 627 646 626 649 0.95

11 11 0.061 5.1 8.5 2.3 3 19 689 705 688 710 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0005	0.042	15.0	1.0	1	23	294	317	294	317	0.94
2	11	0.015	1.2	10.4	4.5	1	19	327	345	327	349	0.92
3	11	2.6e-05	0.0021	19.1	3.7	2	23	355	376	354	376	0.97
4	11	0.00032	0.027	15.6	0.6	1	23	380	403	380	403	0.94
5	11	0.0052	0.43	11.8	0.6	1	23	406	429	406	429	0.96
6	11	0.00093	0.077	14.2	0.4	2	23	502	523	501	523	0.96
7	11	0.06	5	8.5	0.3	2	23	543	565	542	565	0.96
8	11	1e-06	8.5e-05	23.5	4.1	1	23	571	593	571	593	0.98
9	11	0.0004	0.033	15.4	2.6	1	23	598	620	598	620	0.98
10	11	0.001	0.086	14.1	5.1	2	21	627	646	626	649	0.95
11	11	0.061	5.1	8.5	2.3	3	19	689	705	688	710	0.94

Sequence Information

Coding Sequence: ATGGAAGGCGAAGAGTGTAACATGGGTTTCCAAGCGCCGTACCCAATATTGTTCATACCAAAAGTGTGTACAACATTAGAAACTAACTGTGACTTGTCAGAAAATGTGTTTATACAATTGAACATCACAACTCCAGACACAGAAGGCAATGAGACTGCGATATACAATGGTTTCTGTATCGTGAAGGTCATGGAAGGAACGGATATAAACATCAGATTTGCAACACCAGACTACTCAAGTCTTGACAATATACCAGTGATTCTAACAGAAGCTAACCAGATCACAATACCTGCTTACAATGACTCTCAAGTTTGGATCGACCCGGCTAGGAGCCCGTTTGTATACAACCGTTGTGACTCACCGCCTCTGGAGACTTACACCATACATGAGTCTAACGAGAACCACGTCACTATTGAACAgcacaatacatacataacacaaaatgtgtataattataatgaagcTATTCGGTACTCACCTGTCGAAGAACAAAAGACGGTCAAGAAGATACAAGAGAATGTACAGACCTCGGATGGCTATAATTTGTATGGGGAAGATGAATTCGAATGTGGTGTGTTTCTAACTCAGCTGTCTGAAGAAATCAATGAGAAGGATGCTCGGGCTCGAGATGAGAGGAACTTCATTGGTCTTCAAACTGAAAACGGAGcactgaaacagctgatgtctACAAATATACAATCTGTGTCGAAACAACAGAAAACTATACTGTTTTTAGGTCATGATTCTAGTTCCGGACAGACGGTGCAGAACATTGCTATAAATGATCCTTCGCTGGAGTGCGTTGGAGCTGGTGAAGTTGAGAGTGAAGTTACTATTGACGACACGAGGAGCTATACAAACAATCCACGTGCCAAAAAATACCAGTGTAACAAATGCAAACAGATATTCGACCAACTGTCTGCCTTCAAACAGCACGTGGTCAGCAACCACCGGCACTCTATCTCCGGCACTCTCACGTTCATGTGTTCACACTGCGGCAAAACCCTGAAAAACCAAGAAAAATTTGAGCAACACTGCCTCGGCCACGGCGACCCAGACCTAGAATGTAACAAGTGCCATAAAGTTTTCGCGTCAAAATTCACCTTACGCAATCACCGTAAGATACATTCCCGAATGTTCCCCTGCGGCTACTGCTCAAGGACATTTTCCACAGTGCAGGAATTGCGTGCACATTCATCGAAATTACACTTCACTTTTATGTGTGAATTGTGTTCCTTTGTTTGCGATTCTTCAGCGGAATTGACGGCTCACAAGAAAATTATTCATGCGAATGAATCCAACTCTTCAAAGACTTCCAGCGAATCTGACTTCGCTGAAGGCGTATTTGATGGGATCAGTGATATTTCGGTGACAGAAGAGTTAGTTAAGCAAGAAGAAGACGGGCATCTTGAAACTCCTGACTCAGTGATCGCGAAGGTGATGTCTAACAAAATATTTCGAACTCACAGCACTACAAACAAGAAACAGAGGAAATATAATAAGacCTGCGAAGTGTGTCTCAAAAAGTTCGACCGTATCGGTGACCTCAAGAGGCATCTCATCGAACATGTGATCAGGAGCACCCTAGCCAAGAACCCAGTGAACAAGTTCGGGGTCCTCAACATCCGATGTGAAATCTGTCAggaaaaggtatttacaaagaTTGACAGATACAAAGCCCACTTGAGGGAACACGCAAAACTAACACTGTACAAATGCACCTTTTGTGACAAGTCCTTTAGTGACTCCAGCAACTTTTCAAAGCATAAAAAGATCCATGGCACCACCTACTTCCAATGTGACATGTGTCAACGTAAGTTCAACTCTAAAAAAATGATAACTCAGCATATGGagtatcacaaaaaaaatcgaCCTATCAAATGTCAATATTGCGATAAAACTTTCCATTTCGAGTCGATGCTGAATAAACATATAAGATGCTCGCATACCAAAGTAACGTCGAGCAAATCCAGGTGTAGGTTTTGCCGTCAATACTTCAGGAGTTTAAAGGAGAAGTGGGATCATGAATGGACAGTTCATAATGCTAGAAAGATGATTGTGGACTGCCTGGTATGTGGGTCCAGGTTTAGAAAGTATTCGGAGTTAAAGAGACATTGTACGGAGGAGCATGATACCGTCATACCTCCAGCTAAAAGATTGCTAAGATGCAAAAAGAATAGAAAGTCGAAAATTATTGAGGATTAG
Protein Sequence: MEGEECNMGFQAPYPILFIPKVCTTLETNCDLSENVFIQLNITTPDTEGNETAIYNGFCIVKVMEGTDINIRFATPDYSSLDNIPVILTEANQITIPAYNDSQVWIDPARSPFVYNRCDSPPLETYTIHESNENHVTIEQHNTYITQNVYNYNEAIRYSPVEEQKTVKKIQENVQTSDGYNLYGEDEFECGVFLTQLSEEINEKDARARDERNFIGLQTENGALKQLMSTNIQSVSKQQKTILFLGHDSSSGQTVQNIAINDPSLECVGAGEVESEVTIDDTRSYTNNPRAKKYQCNKCKQIFDQLSAFKQHVVSNHRHSISGTLTFMCSHCGKTLKNQEKFEQHCLGHGDPDLECNKCHKVFASKFTLRNHRKIHSRMFPCGYCSRTFSTVQELRAHSSKLHFTFMCELCSFVCDSSAELTAHKKIIHANESNSSKTSSESDFAEGVFDGISDISVTEELVKQEEDGHLETPDSVIAKVMSNKIFRTHSTTNKKQRKYNKTCEVCLKKFDRIGDLKRHLIEHVIRSTLAKNPVNKFGVLNIRCEICQEKVFTKIDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTYFQCDMCQRKFNSKKMITQHMEYHKKNRPIKCQYCDKTFHFESMLNKHIRCSHTKVTSSKSRCRFCRQYFRSLKEKWDHEWTVHNARKMIVDCLVCGSRFRKYSELKRHCTEEHDTVIPPAKRLLRCKKNRKSKIIED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00810403;
90% Identity: iTF_00302460;
80% Identity: -