Basic Information

Insect: Lycophotia porphyrea
Gene Symbol: -
Assembly: GCA_950005105.1
Location: OX465411.1:7540453-7548490[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.59 49 5.4 2.9 1 23 410 432 410 432 0.95

2 9 2.4e-06 0.0002 22.4 0.9 1 23 479 502 479 502 0.97

3 9 0.00036 0.03 15.5 0.2 2 23 508 529 508 529 0.97

4 9 1.6e-05 0.0013 19.8 3.4 1 23 537 559 537 559 0.97

5 9 1.2e-05 0.001 20.1 0.8 1 23 564 586 564 586 0.96

6 9 4.2e-06 0.00035 21.6 1.5 1 23 595 617 595 617 0.99

7 9 6.9e-07 5.8e-05 24.0 1.1 1 23 623 646 623 646 0.97

8 9 0.16 13 7.2 0.5 1 14 652 665 652 675 0.82

9 9 2.5 2.1e+02 3.4 3.9 1 23 683 706 683 706 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.59	49	5.4	2.9	1	23	410	432	410	432	0.95
2	9	2.4e-06	0.0002	22.4	0.9	1	23	479	502	479	502	0.97
3	9	0.00036	0.03	15.5	0.2	2	23	508	529	508	529	0.97
4	9	1.6e-05	0.0013	19.8	3.4	1	23	537	559	537	559	0.97
5	9	1.2e-05	0.001	20.1	0.8	1	23	564	586	564	586	0.96
6	9	4.2e-06	0.00035	21.6	1.5	1	23	595	617	595	617	0.99
7	9	6.9e-07	5.8e-05	24.0	1.1	1	23	623	646	623	646	0.97
8	9	0.16	13	7.2	0.5	1	14	652	665	652	675	0.82
9	9	2.5	2.1e+02	3.4	3.9	1	23	683	706	683	706	0.94

Sequence Information

Coding Sequence: ATGTTGCACAACACAGGGCCTTATGGTCCGAACGAGGCACCTATAAACATGGGAGCGCCTGTTAATATGACACCAATGAGTGGTCACATGAATCTTGCTCATAACATTAATAATTTGAGCAAAATAGCCCACCAAGGCGTCCCAGCGCCTAGCGGGCACTACAACCTACCGGACTATGCACATTACAACCATTCTCCTATTACGATGCCGTCGCAAATGGGTCAGTTTCCCAACTATCAACATCTGGGTTTCCAACAGTCGTATACGAACCAAAATGCGAATAATATGAACGATTTATCATTCCAAAACGGTATGTTTCCTATGAATTTGAATATACAGAACGAACATAACTCTAATATGATGAATTATACTTACGATAAGCGAGTAACTGAGTCAGCCAGGCAAGAAAActttaaagaacaaaatataCGTAAAATGCCGTTAAACATACCTCAGATAccaaataaagtttataataaacacATTAGCGGCAACAACGACTATTTACATAACAATACGTACCAAGAAACTCATCATAATCTAGATTTAAGCATGAAAACTCAAGAAAAACTACAGATCAACAGTACAAGGCggaaaaacattgaaaacacggtcaaattaattgaaaatatcCTTATCCATTCTTCAAATAAACCCAGGGAAGTACCGGTAATTAATACAGTGGTACCAAATACTACTAAAACTGATATACCGTCTGATATgacaattgaaaaaataaaaaagaacacaCAACCATCGAAAATTATCCCTGAAATAAATACAGACTTCTTACCAGAATCTCCATCATCTTCCATCTCTTCGTTCTCAGACTTAAGGAAAGACGATACAAATAATggcaataataaacaaaactcACAAGAAAATGTTGCTAATGAAGAACAGTATCTGGGAGAAATGGAGAGTAATAGTAAAAACATTGAtcaaaataaatcagaaacCGACTCACTGTCGGACGATGATGAGATACAACCTATTGCAATAACACAACACTTTATAAGAGAAGATGCAGAAGTGACTACAGACAATAGTATTGTTATAAAAGTTGAGAAAGCAAGTTGGGCGGACTCCGATTGTTATTCGCCGTTCTTGAAGGACAATCACGGATTTGAGCGGGATGAACAGATGAACTATAGGATTATTGAAGGTGATTGTAGCGTTGAGCAAGCTGTTACTTGCTATAAAAAtgACATAAAAGCAGAAGGAGTCTTCGAATGTCCGCACTGCGCTCTCCTCTTCAAACATCCAAAGAGGTTTCTAATACACAATAAATGGCATACATTCGGCCTAACGAATATTAAACGTATGGAGTACGCAAAAGCAAAAGAACAAAAGAAGAATGAACGAAAAGAGGCTAAGATTATGGAGCGAATGAAGTCTAAAGAAGTGACAGAAGTTAAGACGGATGAAACGGTTTTTCCTTGTAAAGATTGTGATAAAGTGTTCAGTGCTAAGGGAAGCTTGAAGAATCACAGGCAGAGATCACACCCAACTCGTACCCGTGAATGTAAGATCTGTCACAAAGTAATACCAAGCTGGAACGGTCTCCGAGCACATTTGGCGACTCACTCAGCGGAATCAGGGCTCGGTTACCAGTGTAGCGACTGTCCTAAGAGGTTCAAGTATTCACACTCGCTGGCTAAGCACTCTGATACTCACTTGGAAAAAGTCCACGCGTGCGCCGAGTGCCCCAAGAAGTTCGGTTCGCAAGCTCTTTTAAAGATGCATATGAAAACTCACGAGCGAGTGTTGCGTGGAGCCACGTTTAGGTGTACGTACTGTGGGAAGGGGTTCTTTGAGTCTTACAGTTTACAGgTGCACGAAAGAACACATCGCAATGAGAGACCGTTCACGTGTGACATCTGTAACACTAGCTTCGGAACTAACTCCAGTCTAAAGAGACATTTGAAAGTGTCCCACAACACAGCGAAGCCCTATCAGTGTAGGATATGCCGGCGCAACTTCTCCACGGAGTCCATCAGGGACAAACACGAGCTCAGGCTCCACGGAAAGCCTGAGGACTTCAAGTTTCCGTGCAAGCAGTGTTCTCACAAATATTTGAAACTAAAAGATCTTCAGAAACACGTCTACAAAATGCACCCCAAAGGTAAAAGGAAGGAAAAGGTGGTAGAAGAAGAGGAAGCAAGCGAATCGGAATAG
Protein Sequence: MLHNTGPYGPNEAPINMGAPVNMTPMSGHMNLAHNINNLSKIAHQGVPAPSGHYNLPDYAHYNHSPITMPSQMGQFPNYQHLGFQQSYTNQNANNMNDLSFQNGMFPMNLNIQNEHNSNMMNYTYDKRVTESARQENFKEQNIRKMPLNIPQIPNKVYNKHISGNNDYLHNNTYQETHHNLDLSMKTQEKLQINSTRRKNIENTVKLIENILIHSSNKPREVPVINTVVPNTTKTDIPSDMTIEKIKKNTQPSKIIPEINTDFLPESPSSSISSFSDLRKDDTNNGNNKQNSQENVANEEQYLGEMESNSKNIDQNKSETDSLSDDDEIQPIAITQHFIREDAEVTTDNSIVIKVEKASWADSDCYSPFLKDNHGFERDEQMNYRIIEGDCSVEQAVTCYKNDIKAEGVFECPHCALLFKHPKRFLIHNKWHTFGLTNIKRMEYAKAKEQKKNERKEAKIMERMKSKEVTEVKTDETVFPCKDCDKVFSAKGSLKNHRQRSHPTRTRECKICHKVIPSWNGLRAHLATHSAESGLGYQCSDCPKRFKYSHSLAKHSDTHLEKVHACAECPKKFGSQALLKMHMKTHERVLRGATFRCTYCGKGFFESYSLQVHERTHRNERPFTCDICNTSFGTNSSLKRHLKVSHNTAKPYQCRICRRNFSTESIRDKHELRLHGKPEDFKFPCKQCSHKYLKLKDLQKHVYKMHPKGKRKEKVVEEEEASESE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00302464;
90% Identity: iTF_01064033;
80% Identity: -