Basic Information

Insect: Lycophotia porphyrea
Gene Symbol: -
Assembly: GCA_950005105.1
Location: OX465400.1:11584076-11600339[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.2 1e+02 4.4 0.9 6 20 12 26 6 28 0.86

2 14 0.13 11 7.4 0.6 2 20 34 52 33 54 0.93

3 14 0.72 60 5.1 0.5 1 12 199 210 199 219 0.83

4 14 0.41 34 5.9 0.1 1 19 353 371 353 371 0.98

5 14 0.00022 0.018 16.2 0.4 1 23 378 400 378 400 0.98

6 14 0.0038 0.32 12.3 2.1 1 23 414 436 414 436 0.98

7 14 1.2 1e+02 4.4 1.3 1 23 461 482 461 482 0.87

8 14 0.00022 0.019 16.1 0.5 3 23 490 510 488 510 0.96

9 14 0.0013 0.11 13.8 2.3 1 23 526 548 526 548 0.98

10 14 1.5e-06 0.00012 23.0 4.5 1 23 554 576 554 576 0.98

11 14 0.00054 0.045 14.9 5.2 1 23 582 604 582 604 0.97

12 14 9.3e-06 0.00077 20.5 0.4 1 23 610 632 610 632 0.98

13 14 0.00045 0.037 15.2 1.1 1 23 636 658 636 658 0.98

14 14 0.0002 0.017 16.3 0.1 1 23 666 689 666 689 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.2	1e+02	4.4	0.9	6	20	12	26	6	28	0.86
2	14	0.13	11	7.4	0.6	2	20	34	52	33	54	0.93
3	14	0.72	60	5.1	0.5	1	12	199	210	199	219	0.83
4	14	0.41	34	5.9	0.1	1	19	353	371	353	371	0.98
5	14	0.00022	0.018	16.2	0.4	1	23	378	400	378	400	0.98
6	14	0.0038	0.32	12.3	2.1	1	23	414	436	414	436	0.98
7	14	1.2	1e+02	4.4	1.3	1	23	461	482	461	482	0.87
8	14	0.00022	0.019	16.1	0.5	3	23	490	510	488	510	0.96
9	14	0.0013	0.11	13.8	2.3	1	23	526	548	526	548	0.98
10	14	1.5e-06	0.00012	23.0	4.5	1	23	554	576	554	576	0.98
11	14	0.00054	0.045	14.9	5.2	1	23	582	604	582	604	0.97
12	14	9.3e-06	0.00077	20.5	0.4	1	23	610	632	610	632	0.98
13	14	0.00045	0.037	15.2	1.1	1	23	636	658	636	658	0.98
14	14	0.0002	0.017	16.3	0.1	1	23	666	689	666	689	0.96

Sequence Information

Coding Sequence: ATGGGAGGCCAGCCGTTGAATTGTCCCCTTTGCTGCACTACGACTTTTAATTCTAAACAATCTCTACTTGAGCATTTAACAAATGCTTTACAGAATGTATATTGTCCAGTTTGTAACTACAAATGTAACTCTTTCCCACACCTTGTTGAGCATTTAGCTCAGGATAATTGTCAGTCAGCTAGCAATGTACATACTATTATATTTGAGCGCCCATCTGATGAGGACGGCATTGATAACTCATCAGATATTGGAAATTCTGGAATTAAAGTATATCAGAGTGAACATACATACGAAGCTCATGTGGACCCAAGTGaagcaaataaaatgtatgtggaACTATTTAGCAAACAGTTGAAACCGTGTCTACAAACACGGGAATTTAAACTGGTGAAAGAAAATGGGGAGAGTCGGTACATGATTGTGACTCAGGATGAGACTGATGCAGGAGGCACTATTGtgacaaaacaaaatactgATGGAACCATATCACTGACTACTGTTAAAGAAATGAACCTGAAAACAGAGAACTTAATCACACCAGACAATGTACAAGAACATCAGGAAGTCAATCAAGAAGATAATCAGGACGAGATCTACAGCTGCAACACTTGCAAAGTGTCCTTCTCTTCAGTAATAGAGCACATTCAGAACTACCATAATGATCAGGATGTGGTTGTTGAGGAGCCAATGGAAGATGGTCAGACTGAGTCAATGCCTGAATACGATCCAATGGTGAATGAAGACTCATTGGTGACGACAGACAAGCAGACACCTCGGCGCGTCATCACCGATACGGGCGATATTGTGGAGGAACCACTCATATTTAAATCTGATGATCAAATGCTATCGTCGAATACTTTggAGACAACACAAGACCTGattaaatcagaaaaaaaagaactgcGCGTCGTCACCAAACGTTTTCTGCAAGTGGATAAGCTTTGCGACAGTGTCATCAAAGATGCTATCCAAACTGACGCAAAAGACAAAAGCGGCCCGTACCACAAGGTGATCGTCAAAGAAGTGCCAACAGACAGCGGGTTCGCGATCAAGATGTACCAGTGCTTAGCCTGTGATATATCCGTCACCAACTTAGACGAGTTTAAAACACATCCGTGTAAAGTATtaaaatatcCATGCCTGTACTGTCCTGTGGCATATGAAAACTCAAAATCTCTGTGTGCTCACATGAAAGCACACAAAGTGAAAACAGatTCCATCGTCACTGGGCCAGTAACGTACGAATGTGGTGTATGCTGCACAGTATTCCCAACAAACAAGTCTTTGAAACTGCACAAACGGATGCACGATCCTatcaaATCACGGCCCATAGAGCCTCCAATAGAAAACACAGACGGTTCAGAAGTGAGTGAAGGCAGATACCGATGTAATTTCTGCAACAAAATGATCCCCAATGACTACAAGACTATTCACCAGAACTCACATAAAACTTCGGAGAAAATGAATTGCGGTATTTGTAACAAGAAGTTCACATCTATGGAGTATTTGGAAATGCATACGAATGTACATAATGTGGATAAGGCGCCAATAAACAATCAAGATAAGAATCTACCATACAATTGTTTGTATTGTAACAGAAGATTTGCGAGGCCGCACGAGAAAGTGAAACATGAAAGGATACACACAGGTGAGAAGCCACACTCGTGTGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCTTAACCCTGCACATGCGCACGCACACCGGCGCGCGGCCCTACGCCTGCCCGCACTGCGGCAAGAGGTTCAAAGCCCACAGCGTGTACAACCACCACCTGCTAACGCACTCGGAGGTGCGCGCTTACAAGTGCCCGTTCTGCCCCAAAGCGTTCAAGACGTCCGTGCAACTCGCCGGACACAAGAACTCGCATACCAAGCCGTTCTCTTGCCAACATTGTAATAGGCCATTCGCGTCCTTATACGCGGTGCGAGTCCACACAGAAACACACGCTCGCCAGAATAACCTGAAGTTCTCTTGCGAGCTATGCGGCGCCAGCTACGCAAGAGCCTTCGCCCTTAAGGACCATATCAAGCAAGCGCACAGTGAACAGGAACAGGCGCAGTCGCCATCACGAACaattgctgatgatgatgactggttGATCAAAGATAACCCGGATACGGATAGCAATCCGGCTCTCAATAAAGATTTGACGCATGAGATTGATCTGGGAATCACTAGCAATGAACTGATAGTTCCTTGA
Protein Sequence: MGGQPLNCPLCCTTTFNSKQSLLEHLTNALQNVYCPVCNYKCNSFPHLVEHLAQDNCQSASNVHTIIFERPSDEDGIDNSSDIGNSGIKVYQSEHTYEAHVDPSEANKMYVELFSKQLKPCLQTREFKLVKENGESRYMIVTQDETDAGGTIVTKQNTDGTISLTTVKEMNLKTENLITPDNVQEHQEVNQEDNQDEIYSCNTCKVSFSSVIEHIQNYHNDQDVVVEEPMEDGQTESMPEYDPMVNEDSLVTTDKQTPRRVITDTGDIVEEPLIFKSDDQMLSSNTLETTQDLIKSEKKELRVVTKRFLQVDKLCDSVIKDAIQTDAKDKSGPYHKVIVKEVPTDSGFAIKMYQCLACDISVTNLDEFKTHPCKVLKYPCLYCPVAYENSKSLCAHMKAHKVKTDSIVTGPVTYECGVCCTVFPTNKSLKLHKRMHDPIKSRPIEPPIENTDGSEVSEGRYRCNFCNKMIPNDYKTIHQNSHKTSEKMNCGICNKKFTSMEYLEMHTNVHNVDKAPINNQDKNLPYNCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHARQNNLKFSCELCGASYARAFALKDHIKQAHSEQEQAQSPSRTIADDDDWLIKDNPDTDSNPALNKDLTHEIDLGITSNELIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00445469;
90% Identity: iTF_01064919;
80% Identity: -