Basic Information

Insect: Lycophotia porphyrea
Gene Symbol: ham
Assembly: GCA_950005105.1
Location: OX465400.1:11337620-11350973[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.028 2.3 9.5 0.0 2 23 42 64 41 64 0.96

2 9 0.0024 0.2 12.9 0.4 3 23 73 94 71 94 0.92

3 9 1.6e-08 1.4e-06 29.2 0.1 1 23 100 123 100 123 0.96

4 9 1.4e-06 0.00012 23.1 1.7 1 23 129 151 129 151 0.95

5 9 5e-05 0.0041 18.2 6.1 1 23 157 179 157 179 0.99

6 9 0.0001 0.0084 17.2 0.4 2 21 187 206 186 207 0.94

7 9 1.2e-08 9.9e-07 29.6 0.7 1 23 604 626 604 626 0.98

8 9 4.3e-07 3.6e-05 24.7 1.7 1 23 632 655 632 655 0.97

9 9 1.6e-05 0.0013 19.7 3.2 1 23 661 683 661 683 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.028	2.3	9.5	0.0	2	23	42	64	41	64	0.96
2	9	0.0024	0.2	12.9	0.4	3	23	73	94	71	94	0.92
3	9	1.6e-08	1.4e-06	29.2	0.1	1	23	100	123	100	123	0.96
4	9	1.4e-06	0.00012	23.1	1.7	1	23	129	151	129	151	0.95
5	9	5e-05	0.0041	18.2	6.1	1	23	157	179	157	179	0.99
6	9	0.0001	0.0084	17.2	0.4	2	21	187	206	186	207	0.94
7	9	1.2e-08	9.9e-07	29.6	0.7	1	23	604	626	604	626	0.98
8	9	4.3e-07	3.6e-05	24.7	1.7	1	23	632	655	632	655	0.97
9	9	1.6e-05	0.0013	19.7	3.2	1	23	661	683	661	683	0.98

Sequence Information

Coding Sequence: ATGCACAGAGGTTTTCCACAAGCACTAAAGTTCCAACTACTTGTTTCAGAGCGTCAGTCTTCTAACGAAAAGTTCAGTTCCCTTGCGTCAGCAGACGACGAGGAGAGAGAGGACGCTGACATCCGCTGCAGCTTCTGTGATCTACCCTTCCCTAACATCGATGTTCTCGATCGTCACTTGATAACGGAGCACGCCCAGCCGGCCGCTGCAGTTCACTGTGAACTTTGTAACCGAGCTTACAGCACTCGAGTATTGCTCCTGCGACACCGTGCGCTTGCGCATACAGACATCAGAAAGTACCCCTGCGAGAACTGTCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATTCGCGCTCAGCACGCAGGCGCCCGCAGCCACGCCTGCCCCGAGTGCGGGAAGACCTTCGCCACCTCCTCCGGCCTGAAGCAGCACACGCACATACACTCCAGTGTCAAGCCCTTCCAGTGCAAGGTTTGCTTTAAGGCTTACACCCAGTTCTCCAATCTCTGTCGGCACAAGCGGATGCACGTCGCTTGCAGAGCACTCGTTGAATGCGGAAAATGTGGCCAGTCCTTCACGTCTTACGCCTCTCTTACTAAGCACAAGAGATTCTGTGACACCGCTGCAGCAGCTTCCGTTAACCTGAGAGGACAAATGCCCCAGGGCCTATCGCAAATATCGTCGCTACAAAACGTCGGGATGAATAACCCTAACAACAGCAACCCGTTCCCGATGTACAGGGGGCCCACTCTACCCTTGCCATACAACACGTTTGCCCACTACCCGGCGCTATTCTCtgctgccgctgctgctgccTGCCCACCTGAGTTCCTCAGCCCATTGCTGTTCAACGTACAAGGAGCAAGACTCGCTATGGAACATGATATGGCCATGTCAAATGCCAACTTAGTTTCCAAGCAGCAAGAAGGCCGCCTATCAGTCAAAAGCATGGACAGCTCAAACTCTTTAGATGATAACAAGAAGTCTAAGGATTTGGATTACGAAAACAAAAGAGACAGCTACAGTTCAGATAGGGCTACGCCCAACAAATCACATAGCCTTTATTCGAAGCAGTCGCCTCCTTCTGGAGAGGAAGCGTCGTCTCAACGCCGACCATCACCAGTCTTGCCACTGCCTACACCGATTGCTCCATTCAGTTTCGCAAGAGATGAAATGAAGAGGAAGTCTCCGTTCAACTTCTCTCTCAAGCTCAATAATAATGACATTCAGGGTAACAAGTCTCTATCACCATTACCCAAAGACTTGTCTAAGAATGTTATCGAAGATGATAAAATATCTGAATATTCTGATGTTGAAGAAGATACAAAGAAAGACGAAGGTGACCAGCCTTTAGATCTATCGGTATCAAGGAAACAGAACGATAAGGATTCTGAAGCAGAGAATGACGATCGTTCCTTTCGCAACTCAGTCAAGTCTTATTCACCTCCTGAAAGCCCAGCAGAGAGGAGCAAGACTCCTGAAAATGACACAACAGACGTCGATGTTGAAGGCGTAGAACCTAAAAGGGAGGAATCGCCACCGCAGCTAGTATCGCCACCTCTCGCGTTCCCCATGCCCGTTCACCCGCAGCACAGCAACTTGATCGATGCCATGTACCGACCTCGATTCCCATCGTTCCACACTTCTGAATCACTCCTGAACTCGTCGCACTCTCCTTATGTTCCGAGTCCGTTCAATTTTTTATCCCCACTTCTCGGTACTGATGGACCTGACAGGCAATCGAGTGCGTATGCCAAGTTTCAAGAGCTCAGTTCAGGATCCGGAAAGCTACGTGACCGGTACGCTTGTAAGTTCTGCGGAAAAGTGTTTCCACGGAGTGCGAACCTAACTCGTCATCTACGTACACACACTGGCGAGCAGCCTTACAAGTGCAAGTACTGCGAGCGGTCGTTCTCGATCTCGTCGAACCTTCAGCGGCACGTCAGGAACATTCACAACAAGGAGCGGCCATTTCGGTGTCCCTTGTGCGAGAGATGTTTCGGGCAGCAGACGAATCTCGACCGTCACTTGAAGAAGCACGAGGCGGAAGGTGGAGATTCTCCAAGCTCTGCGGATACTGAGAGGGAAGATGCGTATTTCGATGATATTCGGTCGTTCATGGGTAAGGTGACGTGTTCCCCGGGCACGCGCTCCCCGGCGGCCACGCCCCCGCACGGCGCACACGGCGCACACGGCACGCACGGCGCGCACGGCGCGCACGTGGCGCACGGGGCCCACGCCGCGCACGGCCCGCGCCCCTCGCTCGCTATCTCCACATAG
Protein Sequence: MHRGFPQALKFQLLVSERQSSNEKFSSLASADDEEREDADIRCSFCDLPFPNIDVLDRHLITEHAQPAAAVHCELCNRAYSTRVLLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHAGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALVECGKCGQSFTSYASLTKHKRFCDTAAAASVNLRGQMPQGLSQISSLQNVGMNNPNNSNPFPMYRGPTLPLPYNTFAHYPALFSAAAAAACPPEFLSPLLFNVQGARLAMEHDMAMSNANLVSKQQEGRLSVKSMDSSNSLDDNKKSKDLDYENKRDSYSSDRATPNKSHSLYSKQSPPSGEEASSQRRPSPVLPLPTPIAPFSFARDEMKRKSPFNFSLKLNNNDIQGNKSLSPLPKDLSKNVIEDDKISEYSDVEEDTKKDEGDQPLDLSVSRKQNDKDSEAENDDRSFRNSVKSYSPPESPAERSKTPENDTTDVDVEGVEPKREESPPQLVSPPLAFPMPVHPQHSNLIDAMYRPRFPSFHTSESLLNSSHSPYVPSPFNFLSPLLGTDGPDRQSSAYAKFQELSSGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCERCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGTRSPAATPPHGAHGAHGTHGAHGAHVAHGAHAAHGPRPSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00449488;
90% Identity: iTF_00449488;
80% Identity: -