Basic Information

Insect: Lycophotia porphyrea
Gene Symbol: -
Assembly: GCA_950005105.1
Location: OX465398.1:3770514-3774713[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00097 0.081 14.1 6.0 1 23 129 151 129 151 0.98

2 12 0.006 0.5 11.7 0.8 2 23 157 178 156 178 0.96

3 12 3.4e-05 0.0029 18.7 4.0 2 23 226 247 225 247 0.97

4 12 1.2e-05 0.00097 20.2 1.1 1 23 256 278 256 278 0.96

5 12 6.3e-06 0.00052 21.0 3.9 1 23 284 306 284 306 0.97

6 12 2.3e-05 0.0019 19.3 3.5 1 23 312 334 312 334 0.99

7 12 2.8e-08 2.3e-06 28.4 1.0 1 23 340 362 340 362 0.95

8 12 3.2e-05 0.0027 18.8 2.6 1 23 368 390 368 390 0.97

9 12 4.6e-06 0.00038 21.5 0.5 1 23 396 418 396 418 0.98

10 12 0.014 1.2 10.5 6.7 1 23 424 446 424 446 0.97

11 12 2.2e-06 0.00018 22.4 2.0 1 23 452 474 452 474 0.98

12 12 0.00045 0.038 15.2 0.5 1 20 480 499 480 502 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00097	0.081	14.1	6.0	1	23	129	151	129	151	0.98
2	12	0.006	0.5	11.7	0.8	2	23	157	178	156	178	0.96
3	12	3.4e-05	0.0029	18.7	4.0	2	23	226	247	225	247	0.97
4	12	1.2e-05	0.00097	20.2	1.1	1	23	256	278	256	278	0.96
5	12	6.3e-06	0.00052	21.0	3.9	1	23	284	306	284	306	0.97
6	12	2.3e-05	0.0019	19.3	3.5	1	23	312	334	312	334	0.99
7	12	2.8e-08	2.3e-06	28.4	1.0	1	23	340	362	340	362	0.95
8	12	3.2e-05	0.0027	18.8	2.6	1	23	368	390	368	390	0.97
9	12	4.6e-06	0.00038	21.5	0.5	1	23	396	418	396	418	0.98
10	12	0.014	1.2	10.5	6.7	1	23	424	446	424	446	0.97
11	12	2.2e-06	0.00018	22.4	2.0	1	23	452	474	452	474	0.98
12	12	0.00045	0.038	15.2	0.5	1	20	480	499	480	502	0.94

Sequence Information

Coding Sequence: ATGTTAGACATAACGACGTCGTGTCGGACTTGTATGAAGGACAATGTGACTTTGGTGAATTTGTATGACAAAGTTGAAATTGAGGAAAATCGTCTTCAATTAGCTGAGTTACTTGTGCAGTGTACTACAACTGAGGTCTCCAAGGAGGATGGGTTGCCACAGCACCTTTGTGATGCCTGTGTTAAGGTGCTGCAACTTGCATACTCATTCCGTAAGCAAGCGGAAAAGGCACAggatgtattcaaaaaaatccTCAAAAGTAACGTAAAAACAGAACCTCATGAAGATGACCTCAAAACTGAAAATGATCACAACTATTTTGCTACTTACGAAGACTTCAGTTTCAACTCTGATATTTCCAAAACTGAGATCGAGGACAAAGAATACACATGTAGTAAATGTaacaaacattttacaaaagagaAGAAATACTTGAAACATTTAGCAACACACGAGGATTTATCTCTAGAATGTGACATTTGTAAAAAGTTATACGCTAATCAGACACTATTGGATAAACACAAAACCAAACATCTTAAGAAAATGTGTTTAGTTAATAATCAAAGTTTTGTGAATGAGACACAATTAATGGACATGGATGGAATGGATAGTATGGTGAAACATACTGaggaaattgaaattaaaactgaaaatgaAACATCATCAACATTATTAGAGTGTCCACACTGTACTTTCACATTTACAAAGCAAAGATCACTGTCAATGCACATGAGAAAACATAGAAATAAAGATGAGAAGAAAGAATTCATTTGTGACACTTGCGGCAAGACGTTTGCCATGAAACATTTGTTGCAACGGCATGTGGTGATGCACAGTGAGGTAAAGCCACACAAATGTGAGAAATGCTCTAAAACATTCGCCCGGCGCGACCAGCTCATGTCTCACATGTACTCTCATAAAGAGCACAAGCCTTATGTCTGTGAATACTGCAAGAAAAgtTTTGGTCAAATGTGCAGTCTAAAGGATCATCTCCGGACCCACACCGGAGAGACACCGTTCCTGTGTTCAGAGTGTGGCAAGGGTTTCTCTAACAACTCCAACCTGAGGCAGCATATGATGAGGCATACCGGAGTTAAGCCGTATGCTTGTAACTTGTGCCCTAAGACATTCTGTACTAAAGGTCAAATGAGATCGCATGTGACCACACATACCGGGGAGCACCCTTACAAATGCGAGGAGTGTGGCGCCGCCTTCACCAAGCAGAACTCTCTGAAGAAACACTCCATGATACACCTTGCTATACGGCCGTTTGCATGTGAGACTTGTAGAATGAGGTTCACCTGCAAAGACCATCTGAAGCGCCACACCAGAATCCACACTGGCGAGAAACCTTACAGGTGCAAGTATTGCGAGCGAGCGTTCTCGCAGAGCAACGACTTAGTGAAGCACACGCGCCAGCATATCGGACAGAACATATACCAATGCACAATATGCGGCTCCCGATTCCGTCTCCTATCAGAACTAAAGCAGCATTACCCGGTCCACTTCGCAAACGGGACGGCCCCCGAAATCAGTACCAAAGACAGCATACAACCAAGTGACAACGAACGGGAAAAACATCTGCCAATTTTAGAAAGCCTTTTGTCTTTCAAAAATGAGAAAGATCTTCCCCTAATCTTAAAAGCGCCAGAGGAAGATAAAGTTCTCCCGATGCTGACCTTAAAGCCTCAAGGAAGTGAGAGTGAATCCTCGCGGTCCTGTGAGGCGCCAAATAGATTCGTGATTACTATTAACAGTTGTGATACGAATGGGGTTGTTAATGGAATTACTATTAAACTACCGCCTAAAGAAAGCtag
Protein Sequence: MLDITTSCRTCMKDNVTLVNLYDKVEIEENRLQLAELLVQCTTTEVSKEDGLPQHLCDACVKVLQLAYSFRKQAEKAQDVFKKILKSNVKTEPHEDDLKTENDHNYFATYEDFSFNSDISKTEIEDKEYTCSKCNKHFTKEKKYLKHLATHEDLSLECDICKKLYANQTLLDKHKTKHLKKMCLVNNQSFVNETQLMDMDGMDSMVKHTEEIEIKTENETSSTLLECPHCTFTFTKQRSLSMHMRKHRNKDEKKEFICDTCGKTFAMKHLLQRHVVMHSEVKPHKCEKCSKTFARRDQLMSHMYSHKEHKPYVCEYCKKSFGQMCSLKDHLRTHTGETPFLCSECGKGFSNNSNLRQHMMRHTGVKPYACNLCPKTFCTKGQMRSHVTTHTGEHPYKCEECGAAFTKQNSLKKHSMIHLAIRPFACETCRMRFTCKDHLKRHTRIHTGEKPYRCKYCERAFSQSNDLVKHTRQHIGQNIYQCTICGSRFRLLSELKQHYPVHFANGTAPEISTKDSIQPSDNEREKHLPILESLLSFKNEKDLPLILKAPEEDKVLPMLTLKPQGSESESSRSCEAPNRFVITINSCDTNGVVNGITIKLPPKES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00445430;
90% Identity: iTF_01062085;
80% Identity: -