Basic Information

Insect: Lycophotia porphyrea
Gene Symbol: -
Assembly: GCA_950005105.1
Location: OX465389.1:6568472-6582263[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 8.8e-05 0.0073 17.4 2.2 1 23 430 452 430 452 0.97

2 20 0.0046 0.38 12.0 0.6 1 20 458 477 458 480 0.94

3 20 2.3e-05 0.0019 19.3 5.6 1 23 499 521 499 521 0.98

4 20 0.00011 0.0088 17.2 4.1 1 23 527 549 527 549 0.99

5 20 4e-05 0.0034 18.5 5.3 1 23 555 577 555 577 0.97

6 20 9.3e-06 0.00077 20.5 7.4 1 23 583 605 583 605 0.97

7 20 7.8e-07 6.5e-05 23.9 2.9 1 23 611 633 611 633 0.97

8 20 0.00011 0.0092 17.1 6.7 1 23 639 661 639 661 0.97

9 20 0.00011 0.0091 17.1 6.5 1 23 667 689 667 689 0.97

10 20 5.3e-07 4.4e-05 24.4 1.9 1 23 695 717 695 717 0.98

11 20 1.1e-05 0.00088 20.3 7.7 1 23 723 745 723 745 0.98

12 20 2.8e-05 0.0023 19.0 6.6 1 23 751 773 751 773 0.98

13 20 2.2e-06 0.00018 22.5 4.2 1 23 779 801 779 801 0.98

14 20 7.3e-06 0.0006 20.8 5.0 1 23 807 829 807 829 0.96

15 20 1.2e-05 0.00099 20.2 5.2 1 23 835 857 835 857 0.98

16 20 3.3e-06 0.00028 21.9 6.0 1 23 863 885 863 885 0.98

17 20 6.5e-05 0.0054 17.8 7.9 1 23 891 913 891 913 0.97

18 20 2.7e-05 0.0022 19.0 7.7 1 23 919 941 919 941 0.98

19 20 0.0008 0.066 14.4 0.3 1 23 948 970 948 970 0.96

20 20 0.34 28 6.1 4.9 1 23 981 1003 981 1003 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	8.8e-05	0.0073	17.4	2.2	1	23	430	452	430	452	0.97
2	20	0.0046	0.38	12.0	0.6	1	20	458	477	458	480	0.94
3	20	2.3e-05	0.0019	19.3	5.6	1	23	499	521	499	521	0.98
4	20	0.00011	0.0088	17.2	4.1	1	23	527	549	527	549	0.99
5	20	4e-05	0.0034	18.5	5.3	1	23	555	577	555	577	0.97
6	20	9.3e-06	0.00077	20.5	7.4	1	23	583	605	583	605	0.97
7	20	7.8e-07	6.5e-05	23.9	2.9	1	23	611	633	611	633	0.97
8	20	0.00011	0.0092	17.1	6.7	1	23	639	661	639	661	0.97
9	20	0.00011	0.0091	17.1	6.5	1	23	667	689	667	689	0.97
10	20	5.3e-07	4.4e-05	24.4	1.9	1	23	695	717	695	717	0.98
11	20	1.1e-05	0.00088	20.3	7.7	1	23	723	745	723	745	0.98
12	20	2.8e-05	0.0023	19.0	6.6	1	23	751	773	751	773	0.98
13	20	2.2e-06	0.00018	22.5	4.2	1	23	779	801	779	801	0.98
14	20	7.3e-06	0.0006	20.8	5.0	1	23	807	829	807	829	0.96
15	20	1.2e-05	0.00099	20.2	5.2	1	23	835	857	835	857	0.98
16	20	3.3e-06	0.00028	21.9	6.0	1	23	863	885	863	885	0.98
17	20	6.5e-05	0.0054	17.8	7.9	1	23	891	913	891	913	0.97
18	20	2.7e-05	0.0022	19.0	7.7	1	23	919	941	919	941	0.98
19	20	0.0008	0.066	14.4	0.3	1	23	948	970	948	970	0.96
20	20	0.34	28	6.1	4.9	1	23	981	1003	981	1003	0.99

Sequence Information

Coding Sequence: ATGAATCAGGATCACCACAATATGAATACGGGTGGTGGCCAGCCCCCGGGAAGTTCTGAGTCACAGGGCCAAAGAGTTCAGGCCACCCAGCAGCAACAGCAGAATAACTTGCCTGCCACGACATCTGCTACCGATTTACGAGTGAACTCAGCAGCAGTGAACGTTGCTTTGTCTAGTGTCGCGAAATATTGGGTGTTTACAAATTTATTCCCCGGACCGATTCCGCAAGTGTCTGTGTACGGATTGCCTGCCGGTGCCAGGATAGAAAATGGGAAACCTGTTCAGGATCTTGGTCAAGCTCATGCAAGTATACTGAATGGTGATCCAAATATTATACTTGGGCATCATGCAGGCCAGTCCCAAGTCACGGTGTCTGCTGCTGGTGGCCAGCAGATACCAGTCTCACAGATCATTGCCACACAATCTGGACAAACTCATGAAGCTCTTGTGGCCCATAGTCAGCAGCAAGCTGAGCTGGTGGCTGCCCAGAACTCCGGCAACAATGCCCAGGTGTCAGTTAGTGCAGGCCAGGCCACTCACCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATGACGTGGGACACCATTCTCAACACATAATGCAGCAACAATTGATGGCGCAGGCGCGACCAGACCACAACAACCAACAGATTCAACTGACGGTTAGTGAAGACGGCATAGTGACTGTGGTGGAGCCCGCCGGCACGAAGATGGTCGACAAGGAAGAACTTCATGAGGCCATCAAGATGCCCAACGATCACACCCTGACTGTGCACCAGCTGCAACAGATAGTGGGACAACAGGTGATAGACAGCGTAGTACGCATAGAACAAGCGACCGGTGAGCCGGCGAACATTCTAGTGACCCACAACCCTGACGGTACTACCTCTATTGAAGCCAGTGCTGCTGACCCTCTGATTGTCAAGGATGAGAAGAGTGCTAACAAAATAGAGACTGCACAGTTTGCTATACCAGCTGAGATAAAGGATATAAAGGGGATTGACTTGAAGAGTGTAGGAGCCATGGGCATGGAAGGTGCAGTAGTGAAGATCTCAGCCGGCGCGTCGGAGCATGACCTTCACGCGATGTATAAAGTCAATGTGGAAGATCTGTCACAACTGCTGGCTTACCATGAAGTGTTTGGGAAACTTAATGCGGAAGGTCAACCGCAGCAAGCAAAGGTAATAAGCGAGGTAGAAGTAGAAGTGGAAGCCGGCACCAGCGCAGCCATGTCTGAAGCGGAATCTTCCCCTGGCCACCATTCATGTGACATCTGCGGGAAAATATTCCAGTTCAGATACCAACTTATTGTTCATAGGCGTTATCACGGCGAAAGTAAACCGTTCACGTGCCAAGTGTGTGGTTCTGCATTCGCTAATCCTGTCGAATTGTCGAGACATGGAAAATGCCATCTTGCCGGAGACCCGAACGAGAGACACGCCAAGCGGATGGCCCAGGACAAGCCATACGCATGCACCACTTGCCACAAAACTTTCTCCCGTAAAGAACATTTGGACAATCATGTTCGAAGTCATACTGGAGAAACTCCATACAGATGCGAATTCTGCGCAAAGACTTTCACCCGCAAAGAGCACATGGTCAACCACGTACGAAAACATACGGGCGAAACTCCCCACCGATGTGACATTTGCAAGAAGAGCTTCACAAGAAAAGAGCACTTCATGAACCATGTTATGTGGCACACAGGTGAGACGCCGCACCATTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGCGATCTCACACGAACGATACTCCGTTCCGATGTGAACTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACGGGAGAGACTCCGCACCGCTGCGACTTCTGCTCAAAGACGTTCACGCGTAAGGAGCATCTCCTGAACCACGTCCGCCAGCACACGGGCGAGTCGCCTCACCGCTGCAACTTCTGCAGCAAGTCATTCACCCGGCGAGAACATCTCGTCAACCACGTACGACAGCACACTGGGGAGACGCCCTTCCAGTGCGGATACTGCCCTAAAGCGTTCACAAGGAAGGATCACCTCGTGAACCACGTCCGCCAGCACACAGGCGAATCCCCACACAAGTGCTCGTACTGCACAAAATCCTTCACTCGCAAGGAGCACCTGACAAACCACGTGCGACAGCACACGGGCGAGTCGCCGCACCGATGTACTTATTGCGCCAAGTCCTTCACGAGGAAGGAACACCTCACCAACCACGTCAGACAGCACACGGGAGAAACGCCACACAAGTGTACGTACTGCCCGCGGGCCTTCGCGCGCAAGGAGCACCTCAACAACCACATCCGCCAGCACACCGGCGTCACGCCGCACGCCTGCTCCTACTGCAGCAAGAGTTTCACCAGGAAGGAACATCTCGTTAACCACATTCGGCAACACACGGGCGAGACTCCGTTCAAGTGTACGTTTTGTTCAAAGTCGTTCTCTCGTAAGGAGCACCTTACGAACCACGTGAACCTTCACACAGGAGAAACGCCCCACAAATGTCCCTTCTGCACAAAAACATTTTCCAGGAAGGAACACTTGACCAACCACGTCAgAATTCACACGGGTGAGTCTCCGCACCGCTGCGACTTCTGCCAGAAGACGTTCACACGTAAGGAACATTTGACGAATCACCTGAAACAGCACACCGGCGACACCGCACATGTCTGCAAGGTGTGCTCCAAGCACTTTACCAGGAAGGAACACCTTGTGACGCACATGAGGTCGCACAGTTGTGGCGAGCGTCCATTCAGTTGCGGCGAGTGTGGCAAGTCTTTCCCCTTGAAAGGCAACCTACTGTTCCATGAACGATCGCACAACAAGAACAATGCTAATGCCAATAAGCAGTACCGATGTGAAGTCTGCTCTAAGGAATTCCTCTGTAAAGGCCATTTGGTGTCTCATCGGCGCACACACGCCGAATGGGCGGAAGGCGCCGCGACCGGCGAAGCGCCCGCTGAAACAGAAGACTGTACTGATAATAAGTGTATCAAAGTCGAGCCAGAACGAACTGAAAGGAAACATGAAGTCAGGACATCAGTCGAAACGAGACCAGCAGAGCAGAACAATGTCGCACAAAGTCAACCGAACACACCAACTGTGATGATAACGAATAATCAACAAGTGCGCGCGGCTACCGTGGCCACAGTGGGCGCAGTGGGCGCAGTGAACCCGGCGGGCGCGGGCGTGGCGCCCACGTTCGTGACGCACCACGCCGGCGGCACCATCGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence: MNQDHHNMNTGGGQPPGSSESQGQRVQATQQQQQNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQDLGQAHASILNGDPNIILGHHAGQSQVTVSAAGGQQIPVSQIIATQSGQTHEALVAHSQQQAELVAAQNSGNNAQVSVSAGQATHQQVPNNRVEFVQHHNIDMVNDVGHHSQHIMQQQLMAQARPDHNNQQIQLTVSEDGIVTVVEPAGTKMVDKEELHEAIKMPNDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDEKSANKIETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNAEGQPQQAKVISEVEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFARKEHLNNHIRQHTGVTPHACSYCSKSFTRKEHLVNHIRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDTAHVCKVCSKHFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNNANANKQYRCEVCSKEFLCKGHLVSHRRTHAEWAEGAATGEAPAETEDCTDNKCIKVEPERTERKHEVRTSVETRPAEQNNVAQSQPNTPTVMITNNQQVRAATVATVGAVGAVNPAGAGVAPTFVTHHAGGTIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01030446;
90% Identity: iTF_01030446;
80% Identity: -