Lpor009190.1
Basic Information
- Insect
- Lycophotia porphyrea
- Gene Symbol
- -
- Assembly
- GCA_950005105.1
- Location
- OX465391.1:1518724-1521010[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.5e-10 4.2e-07 30.3 0.0 1 42 18 59 18 62 0.89 2 3 4.8 2.4e+03 -0.9 0.0 13 22 132 141 132 144 0.88 3 3 5.1 2.5e+03 -1.0 0.1 14 23 142 150 136 152 0.71
Sequence Information
- Coding Sequence
- ATGCCTCGCAAATATATTAGAAAGGTTGGAGTTCGTCCACGAACTGAATGGACGCAAGAGGCATTAATAGCTGCAATAGACGAAATTTCGAGAGGCATTCTAGGAATTAACGAAATATCTCGTAGATATGGGATTCCCTCAAGAACATTGAGGCGAAGATTCGCTAACAAAAATACGGAAAAACTGACATTAGgaaaaCACCCACTTCTTGATTTTGTAAACGAAAAACGTTTGGTGAGTCATATACAGAAATTAGAAAAAGCTGGTTTCCCTCCGACCCGGGACATGATTCGAAGATTAGCTTTCGAGTTTGCTGAAAAACTGGGTAAAGAAACCAATTTTGATAAAGAGACTCGAAAGGCTGGGCCGCATTGGTTAACATCATTTTTAGAACGTAATAAAGAGTTAAGTATTCGTCAGGCAGAAGGCTTATCAGTTGCAAGAGCACAGGGATTAAATCGAGATGAAGTTAACAAAATGTTTGAACTACTGCTTAAAGTAATGACAGAGCATGACTTACTGGATAAACCGGATAGGATTTACAATGTAGATGAGACAGGTGTCCAGTTAAATAACTCTACTGGAAAAGTCATAGCTACAAGAGGCGCAAGAGTAGTCCATTCTATAACTTCTGGTGAAAAAGGTGAAACTTTATCAGTATGCTGCAATGCTGTGGGGAACTTTCTTCCCCCAGTAGTCATCATTAAAGGAGTAAACAAGAAACCAGAATTTCAGGATGGGCTCCCACCTGGATCAGAAGTCTATATGAATAGAAAATCCGCGTACGTGAATGCTGAATTATTTCACAAGTGGCTGAAAGAACATCTTGTACCTAAAAAACCAATAGGAAAGATTATTTTGATTCTGGATGTTCCAGAGAGCTTTTTTGCAATatctgacatttctttgagtaATCAAAGGCCTACAGAAGACAATGCAGGTGAAAATGATGCACCAGAACCGGAACAAGTTTCATCTAATAGATCAAGTCCTGTAGTTGATCGAGTTCTTTCTAACGTTACTCCTAATTATATGgatatttattatagaaatgaAGAAGCTCTTGAGCAGGAACCAGCTACAGCTGATGTACAGAAGAAAGTGTTACGAACTGCAGTCAAGTTTCCAAAGAAGATTCCAGCCAAATGTATTAAGAAAAGAAAGGGCATTAGAGAATCTAGTGATGAAATGACCATCTCGGATATTTCTAATGAATCTGATTCAGATATCGACCAGGCGAGAGCAGAGGCATACAAGGATTGGGAATGCAAAGAATGCTCTGAAGAATATAAAAAGACCAAATCAACTGCAGATTGGATACAATGTTTAATGTGTAGAAAATGGCTACATGAGGATTGTACCATGTACGGCGACTATTGCAATAAATGCGGTAGGATTAAACGAATGAATACGAAAAAATACAAGTAG
- Protein Sequence
- MPRKYIRKVGVRPRTEWTQEALIAAIDEISRGILGINEISRRYGIPSRTLRRRFANKNTEKLTLGKHPLLDFVNEKRLVSHIQKLEKAGFPPTRDMIRRLAFEFAEKLGKETNFDKETRKAGPHWLTSFLERNKELSIRQAEGLSVARAQGLNRDEVNKMFELLLKVMTEHDLLDKPDRIYNVDETGVQLNNSTGKVIATRGARVVHSITSGEKGETLSVCCNAVGNFLPPVVIIKGVNKKPEFQDGLPPGSEVYMNRKSAYVNAELFHKWLKEHLVPKKPIGKIILILDVPESFFAISDISLSNQRPTEDNAGENDAPEPEQVSSNRSSPVVDRVLSNVTPNYMDIYYRNEEALEQEPATADVQKKVLRTAVKFPKKIPAKCIKKRKGIRESSDEMTISDISNESDSDIDQARAEAYKDWECKECSEEYKKTKSTADWIQCLMCRKWLHEDCTMYGDYCNKCGRIKRMNTKKYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -