Lpor000229.1
Basic Information
- Insect
- Lycophotia porphyrea
- Gene Symbol
- -
- Assembly
- GCA_950005105.1
- Location
- OX465383.1:3476185-3476598[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.1e-13 4.4e-10 39.8 0.0 3 38 17 53 15 57 0.92
Sequence Information
- Coding Sequence
- ATGCCGCGTAATTATAAAAGGACTACTTCTAGACAAGAATGGGATTCGGATAACATGAAAAAAGCCGTTCAAGCCGTATTTCATGGCACCATGGGTTATTTGAAAGCTGCCAAAACTTTTGAGGTACCAAAATCAACATTACAAGATCGAGTTAACCGATTTAGACAGAACAATGATTTGGACTGTTCCACACGCAAAGGTTTGGGACGATTTAAACCGATTTTTTCGACTTCCCAAGAACAGCATGTCTTGATCATGGAAAAACGATTATTTGGTCTCACGTATAAAGATCTTCGACGCTTAGCGTATCAATTCGCAGAAGCAAACAGTATTGACCATTGTTTCAATAAGGTTTCTAAACTAGCGGGAGAAGATTGGTTAGCTGGGTTCATGAAGCGACACCCACAATTATAA
- Protein Sequence
- MPRNYKRTTSRQEWDSDNMKKAVQAVFHGTMGYLKAAKTFEVPKSTLQDRVNRFRQNNDLDCSTRKGLGRFKPIFSTSQEQHVLIMEKRLFGLTYKDLRRLAYQFAEANSIDHCFNKVSKLAGEDWLAGFMKRHPQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01085062; iTF_00850553; iTF_01230455; iTF_00973686; iTF_01062733; iTF_01440916;
- 90% Identity
- iTF_01062733; iTF_01085062; iTF_00973686; iTF_01440916; iTF_01230455; iTF_00850553;
- 80% Identity
- -