Lpor014734.1
Basic Information
- Insect
- Lycophotia porphyrea
- Gene Symbol
- -
- Assembly
- GCA_950005105.1
- Location
- OX465397.1:987549-989223[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-07 0.00014 22.2 0.1 5 31 37 63 36 65 0.94 2 4 2.9e-07 0.00014 22.2 0.1 5 31 125 151 124 153 0.94 3 4 2.9e-07 0.00014 22.2 0.1 5 31 213 239 212 241 0.94 4 4 3.1e-07 0.00015 22.1 0.1 5 31 301 327 300 328 0.94
Sequence Information
- Coding Sequence
- ATGGGATACCTACAGGTAGTACTACAGTCTGCAGCTGGCGCTAGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGTCTGCAGCTGGCGCTAGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGTAGTACTACAGTCTGCAGCTGGCGCTGGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGTAGTACTACAGTCTGCAGCTGGCGCTGGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGTCTGCAGCTGGCGCTGGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGTAGTACTACAGTCTGCAGCTGGCGCTGGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGTAGTACTACAGTCTGCAGCTGGCGCTAGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGTCTGCAGCTGGCGCTAGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGTAGTACTACAGTCTGCAGCTGGCGCTGGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGTAGTACTACAGTCTGCAGCTGGCGCTAGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGTCTGCAGCTGGCGCTAGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGTAGTACTACAGTCTGCAGCTGGCGCTGGCGTCCACCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGTAGTACTACAGTCTGCAGCTGGCGCTAGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGTAG
- Protein Sequence
- MGYLQVVLQSAAGASVHPLRRQLGAACRHAVWDTYSLQLALASIRCGASSVQRAATQYGIPTGSTTVCSWRWRPSAAAPARCSVPPRSMGYLQVVLQSAAGAGVHPLRRQLGAACRHAVWDTYSLQLALASIRCGASSVQRAATQYGIPTGSTTVCSWRWRPSAAAPARCSVPPRSMGYLQVVLQSAAGASVHPLRRQLGAACRHAVWDTYSLQLALASIRCGASSVQRAATQYGIPTGSTTVCSWRWRPSAAAPARCSVPPRSMGYLQVVLQSAAGASVHPLRRQLGAACRHAVWDTYSLQLALASIRCGASSVQRAATQYGIPTGSTTVCSWRWRPPAAAPARCSVPPRSMGYLQVVLQSAAGASVHPLRRQLGAACRHAVWDTYR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -