Basic Information

Insect: Lycocerus yunnanus
Gene Symbol: -
Assembly: GCA_036346125.1
Location: JARFIX010000074.1:1106512-1116327[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00014 0.015 16.9 0.3 1 23 234 257 234 257 0.97

2 9 2.3 2.4e+02 3.7 1.1 1 12 338 349 338 357 0.88

3 9 9 9.5e+02 1.8 0.1 1 23 368 391 368 391 0.80

4 9 3.7e-06 0.00039 21.9 4.3 1 23 397 419 397 419 0.97

5 9 7.2e-05 0.0077 17.8 2.6 2 23 433 455 432 455 0.95

6 9 0.00021 0.022 16.4 1.4 1 23 461 483 461 483 0.97

7 9 0.052 5.6 8.8 4.8 1 23 489 511 489 511 0.97

8 9 0.0097 1 11.1 2.4 1 23 517 540 517 540 0.96

9 9 0.54 57 5.6 1.4 1 23 547 569 547 569 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00014	0.015	16.9	0.3	1	23	234	257	234	257	0.97
2	9	2.3	2.4e+02	3.7	1.1	1	12	338	349	338	357	0.88
3	9	9	9.5e+02	1.8	0.1	1	23	368	391	368	391	0.80
4	9	3.7e-06	0.00039	21.9	4.3	1	23	397	419	397	419	0.97
5	9	7.2e-05	0.0077	17.8	2.6	2	23	433	455	432	455	0.95
6	9	0.00021	0.022	16.4	1.4	1	23	461	483	461	483	0.97
7	9	0.052	5.6	8.8	4.8	1	23	489	511	489	511	0.97
8	9	0.0097	1	11.1	2.4	1	23	517	540	517	540	0.96
9	9	0.54	57	5.6	1.4	1	23	547	569	547	569	0.94

Sequence Information

Coding Sequence: atggaTGGCACGGAAGATGTGTCATATTTAACATTGTTACACGATGGTGCAAATAATTACCTATTGCAGAGTAATGATGAAACGTTAGGAatacaagaagaaaatttaaatgcagAGGCTCTATATACTGCTATTGATGATGGTACTGGAGCTTGGCCAGTAGGTTTACCGATATTAATGAATAGTACTTTGATGTCTGAAGGTGATACAGTGGAATCAACAATTGGCGAAACAAATGATTTGTCTGAATTATATCGAAATCAATTAGAACATGAAGATGAGGTGGTGCCTGCTGCATCATCAGATAATACTCAAATCTCATATCCAGCACAGGAACAGGAAAGTGGTAGTAGATTTGATGGAATCAACCATCCAAAAGAGACTACGGCGTTGGAAAAACTGCAGTCAAattctAAGGAGAACAAACAAGTATCAAATAATccaattattgataatattgaACTGTTCGATACAGTTACAGCTTACAAATGTAAACAATGCCATTATTTAtgtgaaaatgaaaatgatatGTTAAGTCATTGGAAGTGCACCCATTTATTACAACAGaataatttagtAGAAGAATTAAGAACAAatggtaaaaattcaaaaccagACCACaaaggattaaaaattttatattctaataaAGAGATACAAATGAAgtcgattttaaaaaatacagctCATCAAACTGTGTACGTCTGCAGTGAATGTAGGTTGGGTTTTCCAAGTAccgataagttaaaaaatcaCATGATGGTGAAACACAAACTGGTTCAAAATAATGTAGAAGTAAAAGAATTAGTTGAAAATAAAGCTGTgactgaaaataaattaaatttaaagccatCATCGAGCAAACAGAAATCAGTGTTGGCACTTCTTCAGAAGCAAGCAAAAGCCTCAAGAAAAATTAAGTGTTCGGTTAAGGGTTGCGATTTACGTTTTTCAATGGATGACATGCGTTTACGTCACGAAAAGTGTCACGTAGAAGGTCAAAAGAAACAGTTTGTTTGTTTTGAATGTAATACTAAGTTTTCATTATGGAGAGTTTGCAGTATGCACATGTGGAATTGTCATAAAGTTGATCTTGGCTTATATTCTTGTCAAATGTGTTCGATTTTTAAAGCTAGTAGCCCTgtacGTTTAGCAACTCATATGGCAATTCATAAAGATGAAAAGCCGTACGCTTGCTTGCATTGTGATAAAACCTTTAAACAACATTCCCAACTACAAAATCatcaaattattcataaaaaaccAGGAGAAATTCCAGAATGGGCAAGTcaaaaacaatgtaatatttgtaaaaaatatttttcaagttttaaatcgttaaaaaaGCACATCAAAGATGTTCACGATAAATTTAAACCATTTATTTGCAGTGTTTGTGGACATAAGACAACTAGAAAAGCTATGTTGGAGttacatCTTCGTCAACATACCGGAGAAAAGCCACATAAATGCAACCTCTGTCCTTATAGAACAGGAGATCACAATTCATTAAGGCGACATTCTATGAGACATAGTGgggaaattaaatattcatgTCCTCACTGCACTTATCAATCTATTCAAAGTACATCGTACAAAAATCATATTGCTAGCAAACACCCAGGCCTTGGAGGttcatatttttgtactctCTGTTCTTATCACACTGTGAATGAAAATGCATACACTAATCATTTAGCTGATCATAAAAATGGTTTAATAAAGGACATTAGCGAAGGCTCTTCTAATAGACCAGAAAAAATGACTTCAGCTACACAGGGAAAACCAAACCtgagtaataataattgtaatgttACAGAGCAGTTAAAAGAATTAGAAGATGATGAAACACAGGCTTATTTAATGCTTTTGGATCATTCTGATGAAGCTGTAGATACTGGGGGAATTACAATACCAGCTGGTTTTGAAATAccaccttaa
Protein Sequence: MDGTEDVSYLTLLHDGANNYLLQSNDETLGIQEENLNAEALYTAIDDGTGAWPVGLPILMNSTLMSEGDTVESTIGETNDLSELYRNQLEHEDEVVPAASSDNTQISYPAQEQESGSRFDGINHPKETTALEKLQSNSKENKQVSNNPIIDNIELFDTVTAYKCKQCHYLCENENDMLSHWKCTHLLQQNNLVEELRTNGKNSKPDHKGLKILYSNKEIQMKSILKNTAHQTVYVCSECRLGFPSTDKLKNHMMVKHKLVQNNVEVKELVENKAVTENKLNLKPSSSKQKSVLALLQKQAKASRKIKCSVKGCDLRFSMDDMRLRHEKCHVEGQKKQFVCFECNTKFSLWRVCSMHMWNCHKVDLGLYSCQMCSIFKASSPVRLATHMAIHKDEKPYACLHCDKTFKQHSQLQNHQIIHKKPGEIPEWASQKQCNICKKYFSSFKSLKKHIKDVHDKFKPFICSVCGHKTTRKAMLELHLRQHTGEKPHKCNLCPYRTGDHNSLRRHSMRHSGEIKYSCPHCTYQSIQSTSYKNHIASKHPGLGGSYFCTLCSYHTVNENAYTNHLADHKNGLIKDISEGSSNRPEKMTSATQGKPNLSNNNCNVTEQLKELEDDETQAYLMLLDHSDEAVDTGGITIPAGFEIPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -