Lyun003633.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- ZFHX3
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000007.1:1934935-1944283[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.4 1e+03 1.7 4.2 1 20 141 160 141 165 0.89 2 13 4.2 4.5e+02 2.8 0.3 2 20 198 216 197 221 0.91 3 13 8.6 9.1e+02 1.9 1.2 1 23 246 270 246 270 0.85 4 13 0.00051 0.054 15.2 0.4 1 23 381 404 381 404 0.95 5 13 0.019 2.1 10.2 2.8 2 22 490 510 490 513 0.91 6 13 0.072 7.6 8.4 1.6 1 23 525 550 525 550 0.92 7 13 0.0033 0.35 12.6 1.6 1 23 568 590 568 590 0.97 8 13 0.0019 0.2 13.4 0.5 2 23 597 619 596 619 0.94 9 13 0.00027 0.029 16.0 3.3 1 23 726 750 726 750 0.92 10 13 0.0056 0.59 11.9 0.6 1 22 770 791 770 794 0.89 11 13 0.0011 0.12 14.1 0.2 1 23 840 864 840 864 0.93 12 13 0.011 1.2 11.0 0.4 3 21 926 944 924 945 0.93 13 13 0.33 35 6.3 2.5 2 19 1052 1069 1051 1074 0.90
Sequence Information
- Coding Sequence
- ATGTTAGTATTACAGCAAAATGTCAAACATATGCAAACGCTATCGGCTTTACACCATCAGCAGCAATCTCAGCAGCATATGGAGAACATTTACGGTATGTACCCTGGATTGGGAGACAAACCCGAAGCGGCATTAGCAGACATGGCATACAATCAAGCCTTATTAATTCAAATGATGACAGGAGGTCAATTGCCAGGTCACGGAGGTCCAACGGAAATGGCTGTACATTCTGACATGGGATTAAATCCAGAAACTATGGAACCACCTCCCGAACCTGCGGATCTTGATCCTCAAAAAACGTATCATTGTTgtgtttgtaatttatttagtacCGATAATTTGGAGGACTTAGGAAGACATCTTGCTCAAGACAGAACTAGATTAAGAGAACAAGAAATTTTGGCCGTCATAGCCGGTCATTATGTATGTAAATTATGCACGTACAAAACTAATCTAAAAGCTAACTTCCAATTACATTGTAAGACTGATAAACATCTTCAGAGACTGCAGCATGTAAATCATGTTAAAGAAGGAGGCCATAGAAACGAATGGAAACTCAAGTATGCTTCAACCCCTGGAGGTGTACAAATTCGATGTAATGCTTGTGATTATTATACAAATTCGGCGCATAAGTTGCAGTTACATGCTGCCGGTGGTCGGCATGAAGCGGGCGTTGCGCTTTTAAAGTACCTGGAGGAACGATGTTCCGCGTTAAGACCTGAACAACCACGCGTGTTTCACTGTATTCTTTGTGGATTTTCGACATCAAACCGTTTACCCTTATTACAACATATTAAGTCACTCAAACATTTACACTTAGAACAACTACATCAACTTCACAGACGATCTGAAGGAAAAGAGACTGCTGCTGAAATTGGAGAAGTTTTTCACGTTGTGCCAGGACATTTCGATCAACACACCCCCGaacGGAGAGACAGCACAAGTTCGGATATGCAGCAACCAGATCTAAGTAGAGAGTTAAAGAGCGAACCTCACGATGATAGTGATGAACTCAATCATTCTGAAACGGATTCAAATTTACACATGTGTCCATACTGTAATTACACCAACGACTCCGAAATGAGAATTCAAGCTCACGTTTTAGCACAGCATAATGCACATAGTTCCTCTGATATTACGTTTAACTGCCCACTTTGTCAAGACTCGTTTAGAGATAGAACGAATCTCGAAAAACATGTGATGCAAATTCATTCTGTGAATAGTGAAGGTTTGCAAAGATTATTGATGCTTGTAGATCAAAGTCATTGGTTAAATCAAGTTTCCAGAACGCCGACGCCAAATAATTCAATGAATCAGATACAAACATCTCCTAATCAAATGGTTTCGCCGAATTCAGTATCTTCCAAAGATTACAATAAACTAGATCGAAATGATACCGGCAATTTAGAAGGCGAATGTGATCTAATGTCTCCAAATAGTGACGAAAACGCCGACACGGAATCCGAAAAATGCAGTacatgttataaaaattttaaaaatatagatgaATTGTGCTCTCATCAAAACGAAACTGGTCatttagaaattaaacaaaCGCCAAGTGGTCCTGGTTACATGTGTTGGAAGAAGGGATGTAATCAGTTTTTTCCCACAGCTCACACGTTACAAAtgcattttaaagaaattcacgCCAAAAACTCAATTGCACATATGTCTGTATCTGAGAAACACGTTTACAAATATAGGTGTAATCAATGTTCTTTAGCGTTCAAGACGttggaaaaattacaattacattCGCAATATCACATTATACGAGATGCAACTAAATGCGTCCTGTGCGGTAGAAGTTTTCGATCGGTCGTCGCTTTACATAAGCACGTCGAAAGTGTACACTCGGAATTAACGGAGGAAGAACTGATGGCTTACAAACAAAGCTTAATGAATAATCCTTTACTTCTAGCAGGTCTGCAAGGTCAAGTGCTAGATAGTTCAACAAACGACATATTGAAAAAGGAATCCTTGCGATGTGACGATAACGAATCCGTGGATTTTGATGATAGCAAAGAACTAAACACTAGTCACGACGATAGTAATCAAAATGATGGCGAAAATTCGGACGATAGCATAATTTATAAAGATCAGCAATTTTTAGAAGATTATTTAAACAGCCAAGCCATGGCGGAAGACAGTTACAATGATccaaacagaaaatttaaatgccACAGATGTAAAGTCGCTTTCACAAGACAAAGCTATTTAACTGCCCACAATAAAACCCTTTTACATAGAAAAGGTGAAAAATTAAGCTATCCCATGGAGAAGTACCTGGACCCGAATCGACCTTATAAATGTGACGTGTGCAAAGAAAGTTTcactcaaaaaaatattttattggtgCATTACAACTCCGTTAGTCatttgcataaattaaaaagagcCATGATAGAACAacaaaataacaacaataattcGCCAGTGTCGCCAGTAATTAATCAACctcaaaatttaacattaacacCAAAAAGTACATCCGAGGATGACGATAAAAAACGATATcgttgcaacatttgcaaagtGGCATATACCCAAGGTAGCACATTAGATATTCACATGAGAAGTGTGTTACATCAAACTCGTGCTAGTAAATTGCAAGATTTGGCACTAGCGGGTCAGATTGATCTTTCTAAACCTTTAATTGAACAGCCAGAAAGTAACCAGAAGCAAAGCAGCCCTGCACCCTCAAGTGGGGATAAAGGATCTCCCACCCCTTTGTCACCTGGACCGACGAGTGCAGGTAGCCAAGGTATTAACTGTACAAAATGTGGGGTTCTATGTAGTTCGCAAGATCAGTTAAATGCGCACCAACAATTGTGCAGCATGTTTGCTGCTCCTATGACACTGTTTCATAATTTAGAGCAGGGCATCGCAAAGAGTCCTCCGCCAGGTGACAACGATCTCATAAGTCGACTTAATATGTCGAAGAAAAATAATTCGCACATGTACAAACATTTATTGGAAAGTTTTGGATTCGATCTAGTTATGCAATATAATGAAAGCCATCAACGACGTCAAAGGCAACGCGAAGCTGAAGAAAAACTGCAATCGCCACCACCCACCTACGATGACCACCCGGAGGTGCCCCGAGTCGAGGAGGATACAGAAAACAACTTGCCTGAAGTAAGTAGATCCACGTGCCAACATTGCAATAAAGAATTCTCTAGTGTTTGGGTGTTAAAATCTCACTGTGAAGAAGTTCACAAAGATTTAGTGCCACTAGAATTCTTAGAAAAATATGCTCAACAGTTCAAGAACGAATACGAAAAGAAAACTGTGGTCGTGACAGCAGCAACGTCTTCAACGCTAAATACCATTCCGCGAGTGACGACGCCAGGCGTACCAAGCACATCGATGACATCGAACACAGAGGCAACTCCGGAAAAGGAAGAAGACTCCAAGGAAGCCTTGCAcgctaaattaaatttgcatactCCTCCAGAAGCCAATTCCACTGCGCCATCCACTCCTACCTCATCTTCAACTCCAGCAAGTAGTACTGACTCTGTACCCACTAATATTCAGGCTATGATTGCGCAGAGCATGGCACAAAACCCCATGGCTCTTGCACAACAAATGTCTGAAATGCAAGCTGCTCTTAATGTCATGCAGTTGCAGCAATTAAATTTCAATCCTATGATGCAAATGATGGGAATGGGGTTGCCTCTTGGTTTAAACGCACTTGCTGCCATGAATCTACAGCCACCGTTGGTACCTTTGATGATGCCACCGCCGCCGTACGATCCCATGACGCAATATGGTCCACAAGATCAACAAGCAATTATGGCAAAACAACAATCGAATAATGCAACAGCAAGCGGCCGCTAA
- Protein Sequence
- MLVLQQNVKHMQTLSALHHQQQSQQHMENIYGMYPGLGDKPEAALADMAYNQALLIQMMTGGQLPGHGGPTEMAVHSDMGLNPETMEPPPEPADLDPQKTYHCCVCNLFSTDNLEDLGRHLAQDRTRLREQEILAVIAGHYVCKLCTYKTNLKANFQLHCKTDKHLQRLQHVNHVKEGGHRNEWKLKYASTPGGVQIRCNACDYYTNSAHKLQLHAAGGRHEAGVALLKYLEERCSALRPEQPRVFHCILCGFSTSNRLPLLQHIKSLKHLHLEQLHQLHRRSEGKETAAEIGEVFHVVPGHFDQHTPERRDSTSSDMQQPDLSRELKSEPHDDSDELNHSETDSNLHMCPYCNYTNDSEMRIQAHVLAQHNAHSSSDITFNCPLCQDSFRDRTNLEKHVMQIHSVNSEGLQRLLMLVDQSHWLNQVSRTPTPNNSMNQIQTSPNQMVSPNSVSSKDYNKLDRNDTGNLEGECDLMSPNSDENADTESEKCSTCYKNFKNIDELCSHQNETGHLEIKQTPSGPGYMCWKKGCNQFFPTAHTLQMHFKEIHAKNSIAHMSVSEKHVYKYRCNQCSLAFKTLEKLQLHSQYHIIRDATKCVLCGRSFRSVVALHKHVESVHSELTEEELMAYKQSLMNNPLLLAGLQGQVLDSSTNDILKKESLRCDDNESVDFDDSKELNTSHDDSNQNDGENSDDSIIYKDQQFLEDYLNSQAMAEDSYNDPNRKFKCHRCKVAFTRQSYLTAHNKTLLHRKGEKLSYPMEKYLDPNRPYKCDVCKESFTQKNILLVHYNSVSHLHKLKRAMIEQQNNNNNSPVSPVINQPQNLTLTPKSTSEDDDKKRYRCNICKVAYTQGSTLDIHMRSVLHQTRASKLQDLALAGQIDLSKPLIEQPESNQKQSSPAPSSGDKGSPTPLSPGPTSAGSQGINCTKCGVLCSSQDQLNAHQQLCSMFAAPMTLFHNLEQGIAKSPPPGDNDLISRLNMSKKNNSHMYKHLLESFGFDLVMQYNESHQRRQRQREAEEKLQSPPPTYDDHPEVPRVEEDTENNLPEVSRSTCQHCNKEFSSVWVLKSHCEEVHKDLVPLEFLEKYAQQFKNEYEKKTVVVTAATSSTLNTIPRVTTPGVPSTSMTSNTEATPEKEEDSKEALHAKLNLHTPPEANSTAPSTPTSSSTPASSTDSVPTNIQAMIAQSMAQNPMALAQQMSEMQAALNVMQLQQLNFNPMMQMMGMGLPLGLNALAAMNLQPPLVPLMMPPPPYDPMTQYGPQDQQAIMAKQQSNNATASGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -