Basic Information

Insect: Lycocerus yunnanus
Gene Symbol: prdm10
Assembly: GCA_036346125.1
Location: JARFIX010000060.1:668548-676031[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.64 68 5.4 0.3 2 23 471 494 470 494 0.94

2 11 6.1e-05 0.0064 18.1 0.3 1 23 511 533 511 533 0.97

3 11 0.0022 0.24 13.1 0.9 1 23 566 588 566 588 0.97

4 11 0.81 86 5.1 1.8 2 23 597 618 596 618 0.96

5 11 0.0027 0.29 12.9 1.8 1 23 625 647 625 647 0.97

6 11 0.00028 0.03 16.0 1.2 1 23 653 676 653 676 0.96

7 11 0.0001 0.011 17.3 2.4 1 23 681 703 681 703 0.95

8 11 2e-05 0.0022 19.6 1.0 1 23 709 732 709 732 0.94

9 11 0.011 1.1 11.0 1.6 1 23 771 794 771 794 0.97

10 11 9.3e-05 0.0099 17.5 2.3 1 23 816 839 816 839 0.97

11 11 0.0024 0.26 13.0 2.6 3 23 879 900 878 900 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.64	68	5.4	0.3	2	23	471	494	470	494	0.94
2	11	6.1e-05	0.0064	18.1	0.3	1	23	511	533	511	533	0.97
3	11	0.0022	0.24	13.1	0.9	1	23	566	588	566	588	0.97
4	11	0.81	86	5.1	1.8	2	23	597	618	596	618	0.96
5	11	0.0027	0.29	12.9	1.8	1	23	625	647	625	647	0.97
6	11	0.00028	0.03	16.0	1.2	1	23	653	676	653	676	0.96
7	11	0.0001	0.011	17.3	2.4	1	23	681	703	681	703	0.95
8	11	2e-05	0.0022	19.6	1.0	1	23	709	732	709	732	0.94
9	11	0.011	1.1	11.0	1.6	1	23	771	794	771	794	0.97
10	11	9.3e-05	0.0099	17.5	2.3	1	23	816	839	816	839	0.97
11	11	0.0024	0.26	13.0	2.6	3	23	879	900	878	900	0.97

Sequence Information

Coding Sequence: ATGGAGGGCACTTCAATGGATGTGGTACCCTTCGAAAGCGGTAATACTGCAGTATCAAATTTTAATCAGAACGTTTCGTGGAAGAACGTCGGAAATGCGGCAAGCCCCACGTTTGTTTTTATTGCCgTTGAATGTGTGAAGGACGAAAACGAGTTTAAATTTGGATCGGGAATCAACTTTAGAGATGCAGGTGACTACGAGCACGTCAGTCCTTTGGATCCCAATATGGGTTCGACTGCACGCTACAGCCCCACTTACGTGGAGTCCGATATCACGTACACTAATTCGGTTGTTGTACAGCAATTAATATCCACCAATTCGGAAGACAGACAGCTCATGATTCAAAATCGTGATTCACTTGTCCCAAATTTAGGTGGTACCAATTTTGACGGATTGGAAAGTTCCTTGAACGCAGCCGATGCTAATCTTTTTAAACAGGTCATTTCGAACAGGTACTTATTGAATAGACCTGCAAACGAGGACCCAGAAGCCAATGTTTTACACTTGGTTCCTGATCCAAACACAGAAGAGGAAGTTCAGTTGATGATTACTGACCAAGCTACAGGTGTGTCTTACAATGTGAGTACTCAAGAATATTTAGTAGAGAGGTGCCTATCAGACGAACAACAACTTTTGGATTCTTTAGAACCAGATTCTCTCTTAAATTCTGCAGACCTTTTAACTCTGGACGATTCCACTCTGAAGTCGCAGTTATCTGACATAGCAGATACTTCCAATTGTAACATTACGGATgttcttattaaaattgaagAGTGTGAGGAGATAAAATCGGACAATAATATGATGGGGTTACAAAATTCGGTTGCAGATGTCAGAATTATTGCAGATCAACCGGTGAAATCTCGTGCTAGGGCTTCATTGCCAACATCACATTTAGCTATCGTGGAAAAGGACAAAGaaTGTGGCGTATTTGCACGCAAATTGATACCAAAGAAAACCAGATTTGGACCCATGGAGGGCGTTTTGATGGTAAATGATGCTAAAAATGATATTAATGGTTTAAAATTGTTGCTGGATGTGGAAGATGGAATTACTCATCGATTGGTAGTGTCGGATGAAAatgtTTCAAATTGGATGCGGTTTGTTAGAAGAGCCGAAAATTACTTGGAACAAAACCTTTTGCTTTCGCAACACAATAGCGGTTTATATTTTACCGCCACTGTTAACATTCATCCTAAGCAGGAACTTTTGGTTGGATATTGCGCCGAATACGCTAGAAAACACAACCTCGTTTTCTACTCTCCCGTTAATGATCCGTTACCTCccttaaacaattttattacgaGTAAATGTGACGACAAAAAAACATTATCagaaaaagaagagaaaattcttaaattaaaggACGATCAGGCAAAAAGCGAGAAAAAATTTGACACGATTGTTTTGGAATGTAAAATATGCAGCGGTGTGATTTCTTGTTCGGACGTTGAACTGTTAACCAAACATCTTAGCTCACATGGAATTGTGTCGCCCACTTCATTGGAAGACAATTTTACAATTGTAGATTTTGTGTGCAACAAGTGCGACGAATCGTTTGCAACTGAAGCACTTTTAAAAGTACACAATCAACGTCACAAAGTCAACATTAGCGAAACAAAGAATAAAAATCGACGAAGCGATAAAAATTGGGACGATAAAGGAGGTAAAAATTGGGAAGTCAAAGGAGGTGGGCACAAGTGTCCCGTCTGTTACAAAGTGTTTGCATCTTTAGAACGAATTCAAAAACACACTTTGGTGCATGGATCGGAAGAATCAAAACCGTTAAAGTGCGATACGTGTGCAAAGAGATTTTTGAATAACTCTGCTTTGGCATGTCACGTCAAAACTCACAACAAAGACAAAAAGATGTTTGAATGTCCTATGTGCAAAGAATCGTTCGACCACGTCGTACATCTCAAAGGGCACGCTTCAAAACATCGTCAGGATGGAAAGTACATCTGCCCACACtgcgataaaatttttaaagagtaCAGCGTGATTCGAAAACACATTAGGGCGTTTCATTGTGACAGGAAACACAACTGCCCACACTGCGGCAAACCTTTCCCGACATTGGATAAACTTCGGATGCACTCCTTGCGTCACTCAGATCATAGAGAATTTTTGTGTGCCGATTGTGGTAAGCAATTCAAACGTAAAGACAAACTAAAGGAACATGCTAAACGTGTGCACGCCGACGAACGGGAAAATACAATGCCAAAGCACGCAAAAATTAACGTACGAAAcaacaataacaacaaaaaattcatGCCTAAAGTTCAACCCACCGATTACCACCGTTTTATTTACAAATGTCACTCCTGTTTGGTGGGATTCAAACGTCGTGGGATGCTTGTAAATCATTTAGCTAAACGTCACCCTGATATAAGCCTTGATTCGGTCCCCGAATTGAATTTACCTATTTTGCGTACTACGCGTGATTATTATTGCCAATATTGCgataaagtttataaaagtaGCTCGAAACGTAAGGCGCACATCCTTAAAAACCATCCAGGCCAAGCTTTGCCTATGAGCAATCGAAAGCGGGGTTCTTTACCGGAAGTTTCAGGACTACCGAATCCAACGTTTTCACAAACTGTTGGAAGTATTACCACACGCCCCCAAGCTTGTCAGTGGTGTCACAAGCAATATGCAAGCAAGGCAAAGCTGCTGCAACACCAACGGAAGAAGCATTCTAATTTTCTTCAGTCTCAATCGCGTAGTGACGAAAATGCAAAACAAGGAAACGAAATTAATCCACCAGTAAGCCAAGAAAAAATGCAGGAGGTTGTGGTGGATTCGCGCTCGGTAAAAAGAGACTTTCAGgtgACGGATGATTTTTTAGCTGAAGTTATAACTTTGAGCGGCGATGAACAGTACTATAGAATTATGTCGGTGCCATCTAGCAATTCAATAATCAACTTAAACCAATCATCGGATCTCAATCGTGCACCCGACTCTAGATTATACCATTTGTTAACGACAGGAAGTGTTCCCAGGGGTCATCGTTTAGTTCTCCATCTAGCATCTCTGTTTGCTTTGCTCGAGTAG
Protein Sequence: MEGTSMDVVPFESGNTAVSNFNQNVSWKNVGNAASPTFVFIAVECVKDENEFKFGSGINFRDAGDYEHVSPLDPNMGSTARYSPTYVESDITYTNSVVVQQLISTNSEDRQLMIQNRDSLVPNLGGTNFDGLESSLNAADANLFKQVISNRYLLNRPANEDPEANVLHLVPDPNTEEEVQLMITDQATGVSYNVSTQEYLVERCLSDEQQLLDSLEPDSLLNSADLLTLDDSTLKSQLSDIADTSNCNITDVLIKIEECEEIKSDNNMMGLQNSVADVRIIADQPVKSRARASLPTSHLAIVEKDKECGVFARKLIPKKTRFGPMEGVLMVNDAKNDINGLKLLLDVEDGITHRLVVSDENVSNWMRFVRRAENYLEQNLLLSQHNSGLYFTATVNIHPKQELLVGYCAEYARKHNLVFYSPVNDPLPPLNNFITSKCDDKKTLSEKEEKILKLKDDQAKSEKKFDTIVLECKICSGVISCSDVELLTKHLSSHGIVSPTSLEDNFTIVDFVCNKCDESFATEALLKVHNQRHKVNISETKNKNRRSDKNWDDKGGKNWEVKGGGHKCPVCYKVFASLERIQKHTLVHGSEESKPLKCDTCAKRFLNNSALACHVKTHNKDKKMFECPMCKESFDHVVHLKGHASKHRQDGKYICPHCDKIFKEYSVIRKHIRAFHCDRKHNCPHCGKPFPTLDKLRMHSLRHSDHREFLCADCGKQFKRKDKLKEHAKRVHADERENTMPKHAKINVRNNNNNKKFMPKVQPTDYHRFIYKCHSCLVGFKRRGMLVNHLAKRHPDISLDSVPELNLPILRTTRDYYCQYCDKVYKSSSKRKAHILKNHPGQALPMSNRKRGSLPEVSGLPNPTFSQTVGSITTRPQACQWCHKQYASKAKLLQHQRKKHSNFLQSQSRSDENAKQGNEINPPVSQEKMQEVVVDSRSVKRDFQVTDDFLAEVITLSGDEQYYRIMSVPSSNSIINLNQSSDLNRAPDSRLYHLLTTGSVPRGHRLVLHLASLFALLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292737;
90% Identity: iTF_00269090;
80% Identity: -