Basic Information

Insect: Lycocerus yunnanus
Gene Symbol: -
Assembly: GCA_036346125.1
Location: JARFIX010000010.1:2584231-2591150[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0084 0.9 11.3 0.0 2 20 34 52 33 54 0.93

2 14 3.5 3.7e+02 3.1 0.9 1 12 127 138 127 142 0.91

3 14 0.68 72 5.3 3.2 2 19 238 255 237 258 0.93

4 14 4.3e-05 0.0046 18.5 3.8 2 23 273 294 273 294 0.98

5 14 0.00071 0.075 14.7 0.5 1 23 311 333 311 333 0.98

6 14 2.7 2.9e+02 3.4 0.7 1 14 364 376 364 385 0.71

7 14 5.1e-05 0.0054 18.3 2.4 1 23 391 413 391 413 0.98

8 14 0.2 21 7.0 0.7 3 21 421 439 419 440 0.92

9 14 4.8e-05 0.0051 18.4 1.9 1 23 447 469 447 469 0.97

10 14 1.7e-06 0.00018 22.9 2.9 1 23 475 497 475 497 0.97

11 14 0.0017 0.18 13.5 5.7 1 23 503 525 503 525 0.98

12 14 2.1e-05 0.0022 19.5 1.0 1 23 531 553 531 553 0.99

13 14 2.8e-05 0.003 19.1 0.6 1 23 557 579 557 579 0.98

14 14 0.00016 0.017 16.8 0.3 1 23 587 610 587 610 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0084	0.9	11.3	0.0	2	20	34	52	33	54	0.93
2	14	3.5	3.7e+02	3.1	0.9	1	12	127	138	127	142	0.91
3	14	0.68	72	5.3	3.2	2	19	238	255	237	258	0.93
4	14	4.3e-05	0.0046	18.5	3.8	2	23	273	294	273	294	0.98
5	14	0.00071	0.075	14.7	0.5	1	23	311	333	311	333	0.98
6	14	2.7	2.9e+02	3.4	0.7	1	14	364	376	364	385	0.71
7	14	5.1e-05	0.0054	18.3	2.4	1	23	391	413	391	413	0.98
8	14	0.2	21	7.0	0.7	3	21	421	439	419	440	0.92
9	14	4.8e-05	0.0051	18.4	1.9	1	23	447	469	447	469	0.97
10	14	1.7e-06	0.00018	22.9	2.9	1	23	475	497	475	497	0.97
11	14	0.0017	0.18	13.5	5.7	1	23	503	525	503	525	0.98
12	14	2.1e-05	0.0022	19.5	1.0	1	23	531	553	531	553	0.99
13	14	2.8e-05	0.003	19.1	0.6	1	23	557	579	557	579	0.98
14	14	0.00016	0.017	16.8	0.3	1	23	587	610	587	610	0.97

Sequence Information

Coding Sequence: ATGGGATCTTTACAATTGGCCTGCCCTTTGTGCTGCAGCGAAACCTTTCCATGTcacaattctttaaaatatcacTTGCTCAGTATTAACGATAACTTGAATTGTCCTatttgtagtaaaaaatttgaacaagtCTTTGAACTGGCAATACACATTGGCAGAAAATGTCTTGAAAGTGATAACGAAGAAGTATTGTCTGAAACCGACACGAATTTAAAAGTCGAATTGAACACTGAAAATTGTAACGATAATTTATCGGATAAGATTGTAACAGAAACTAGAATAATTATAACCAATGACAATATGGAAGAAAGCGAAGTAGTTGTTGATGAAGATGTTATTGCTGATGATGACGATGATGAAAGTAATAAAGACGTGTATTATTGCTCCAGTTGTGACACTAATTTTACTTCCATAGAAAagcatatttttgaatttcatcaAGGTCACGAGGTGCTCTTGGAGTCAGAAACTGACGATCCAGTGGACGAAGAAGAAGTATCGACCAATACGCTTTTAATGGCAAAAGAAGAAGTAAATTTAGAAGAGGATCCAGTTGAACTTATGACCCCTGAAGATTTATTAAATACTGTGCAAGAAGAAGATTGTTTTGACAAAGATGGACGATTGTTTACACGTAAgattgttaaaattgaaaaattttgggaTGACAAGGAAACTCCGACAGGAggaaaaattgtacaatttttgcAATGTTCAAAATGTGAAGTCAAGTTTCAAACGCCAGAATTATATTGCAAACATAATTGTATCACGCCGTTAATTCAAGGagagaataaaaaacaaaaatataggaGGTGTAAAATATGCAatacttgttttgttaattcaTATTTTCTGTCGGTTCATATGAAAACACACAAAACAGAAACTATTACCACTAAATCAGAAATTGATCCTCATCCACCATTcgtatgtgaaatttgtaatactGAGTTTCCGGCATATAAATCTTTACGTTTGCACAAAAGAATGCACGAACCAATCAAGGCGAAAGACATCGAACCACCTGTTAATTACGATATGTTAGGTGAAGAAGTTTCTACTGAGGATGGGCTTAGAGAAATGTTTTTATGTGAGATTTGTAATAAACCATATGATAAGGAATACGAAGAGGCTCACAAAAAATTTCATAGTAAAGAAATAGATTACAATTGTAAAACGTGCAATCGTAAATTCTTTTCAAAGGAAAATTTGGACATGCACATGCGCGCTCACGTAgatgcaaaaaaatttggatGTTCTTActgtaaaaagaaatttttaactcAAGAAAAATTAGATGATCATTTATCCACCAAGTGTCAAGATCGACAATATGCATGCCAATATTGTGGAAGACGTTTTTCTAGACCACACGAAAAAGTTAAACATGAACGAATACATACCGGAGAAAAACCACacatttgtgaaatttgtgggaAAGCATTTCGCGTTAGTTATTGTTTAACACTTCATATGCGTACCCATTCTGGTACTAGACCTTATAAATGTGATTTTTGTGGTAAGAGATTTAAAGCTCATAGTGTGTATAATCATCACTTGTTAACTCATTCTGATGATCGTAAATACAAGTGTACTTACTgtccaaaaacttttaaaacggGCGTTCAATTGGCTGGCCATAAAAATACACACACTAAACCATTCACGTGCACTAAATGCCAGAGGCCATTTGCTTCCTTATACTCGGTGAGAGCTCATATGGAAACTCATGAACGTCAAAATAATTTGAAGTATCAATGTTTTCTGTGTGGTGCATCATATGCAAGGTCATTTGCATTACGCGATCATATTAAAGAACAACATGCAGATGAACCAGAAGCTCAATCACGTTTGGCAGTTGAAACTTCCATTCTAGAAGCGACTACAATTTATCCAAATGTTCAAAGTGAGGAAACGCATGCTGCAATTTTACCTGATggtgaaaatatattaatagaCATTGGCGGTGAAGATGTGGAAAATATTAgtgtataa
Protein Sequence: MGSLQLACPLCCSETFPCHNSLKYHLLSINDNLNCPICSKKFEQVFELAIHIGRKCLESDNEEVLSETDTNLKVELNTENCNDNLSDKIVTETRIIITNDNMEESEVVVDEDVIADDDDDESNKDVYYCSSCDTNFTSIEKHIFEFHQGHEVLLESETDDPVDEEEVSTNTLLMAKEEVNLEEDPVELMTPEDLLNTVQEEDCFDKDGRLFTRKIVKIEKFWDDKETPTGGKIVQFLQCSKCEVKFQTPELYCKHNCITPLIQGENKKQKYRRCKICNTCFVNSYFLSVHMKTHKTETITTKSEIDPHPPFVCEICNTEFPAYKSLRLHKRMHEPIKAKDIEPPVNYDMLGEEVSTEDGLREMFLCEICNKPYDKEYEEAHKKFHSKEIDYNCKTCNRKFFSKENLDMHMRAHVDAKKFGCSYCKKKFLTQEKLDDHLSTKCQDRQYACQYCGRRFSRPHEKVKHERIHTGEKPHICEICGKAFRVSYCLTLHMRTHSGTRPYKCDFCGKRFKAHSVYNHHLLTHSDDRKYKCTYCPKTFKTGVQLAGHKNTHTKPFTCTKCQRPFASLYSVRAHMETHERQNNLKYQCFLCGASYARSFALRDHIKEQHADEPEAQSRLAVETSILEATTIYPNVQSEETHAAILPDGENILIDIGGEDVENISV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01294234;
90% Identity: iTF_00271709;
80% Identity: -