Lyun012650.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000021.1:2992217-2993418[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.2e-05 0.0066 18.0 3.8 2 23 48 69 47 69 0.97 2 11 0.013 1.4 10.7 0.0 1 23 89 111 89 111 0.98 3 11 0.3 32 6.5 2.2 1 23 115 137 115 137 0.87 4 11 0.015 1.6 10.5 1.8 1 23 143 166 143 166 0.98 5 11 0.0014 0.15 13.7 2.3 1 23 172 194 172 194 0.97 6 11 4.3e-05 0.0046 18.5 1.1 1 23 200 223 200 223 0.97 7 11 2.4e-06 0.00025 22.5 2.6 2 23 235 256 234 256 0.98 8 11 8.9e-06 0.00095 20.7 1.9 3 23 271 291 263 291 0.97 9 11 4.7e-06 0.0005 21.6 1.4 1 23 297 319 297 319 0.99 10 11 3.5e-06 0.00038 22.0 1.1 1 23 325 347 325 347 0.98 11 11 0.0045 0.48 12.2 0.7 1 22 353 374 353 374 0.96
Sequence Information
- Coding Sequence
- ATGCCTCTTTTCTATTTTGTGTTGATTAAATGTAGAAGgttTGTggtattttctaatataaaacaGGAAGACTTAAATAGTAGTGACGATGTGATTTCGTTTATAAAAAAACCTAAGCAAAAAAGAATTAAGCATATGTGGTCGTGTCGAAAATGTCACGAATCGTTCGCCACGTCCAGACAATTACGCGAACACAGGAAAACTCACAGAAAAGAAGAAAACGACGCACAATATGAATATAAATACGACAACCATAAAAACGTTTTTGTGTGCTTTACGTGCGACATAGAAGTTTCAACTCAGGAAGAAATCGAAGAACATATTTTGGTACACGCCGAAAAGTTCGTGTGCCAAATTTGTGATCAGACTTTTTTAAAACCCTACGAATTTGCGTGCCATATGTACAATCACGATCAGAGTAAAGGTTTTCGATGTCCGTTTTGCAATCACGAAACCAACCGACGTACCGCGATCTCCATCCACATTAACACTTATCATCTccgtaaatttatttacacttgTAAACTTTGCGGAAAGGGTTTCAACGACTGCCTCCTCTACAAGGAACACAGCAATATACACGAGGGTATTAAACCGTTTCAGTGTGTGGTGTGCACAAAGGAATTTGCGTTTTCCAGTTACCTGACAACTCATCAGATACGTAACCATAGGGTAGCAATCGACGGTGTCGTTGGTACCAATCAATGTTACGTTTGTTCGAAAAGTTTTTCTCGAAAGAACACTTTGGAGAAACACATTAAGCGACATCAAAGTTTGAGCGAGAAAAGAATTCACGAGAAAAAGCACCTATGTGATGTATGCGGGAAAGGTTTTGCCCGGTCCGAAAAGTTACGTATTCATTATCGGGTTCACACCGGCGTCAAACCCTACACTTGTTCGTACTGTGccaaaagttttacaaaaaaagattACCTGATTATGCACGAACGGGTTCATAGTGGAGAAAAACCGTACTCGTGTGAATATTGTGGCAAGTGCTTCAACCAAGGTGCGCCATTAAGACTACACATTAGAAGCCACACGGGCGAAAGACCCTACAAGTGTCATTTTTGTAATAACGGTTTCATTTCCAGAGGTGTACTTAATCTACATCTGAGAAGCTGCACCGGAATCTCCACATAA
- Protein Sequence
- MPLFYFVLIKCRRFVVFSNIKQEDLNSSDDVISFIKKPKQKRIKHMWSCRKCHESFATSRQLREHRKTHRKEENDAQYEYKYDNHKNVFVCFTCDIEVSTQEEIEEHILVHAEKFVCQICDQTFLKPYEFACHMYNHDQSKGFRCPFCNHETNRRTAISIHINTYHLRKFIYTCKLCGKGFNDCLLYKEHSNIHEGIKPFQCVVCTKEFAFSSYLTTHQIRNHRVAIDGVVGTNQCYVCSKSFSRKNTLEKHIKRHQSLSEKRIHEKKHLCDVCGKGFARSEKLRIHYRVHTGVKPYTCSYCAKSFTKKDYLIMHERVHSGEKPYSCEYCGKCFNQGAPLRLHIRSHTGERPYKCHFCNNGFISRGVLNLHLRSCTGIST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00273025;
- 90% Identity
- iTF_00273025;
- 80% Identity
- -