Lyun038713.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- zfy1
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000685.1:71190-72543[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9.9 1.1e+03 1.7 0.3 5 16 22 33 21 35 0.86 2 11 0.0003 0.032 15.9 4.3 3 23 105 125 104 125 0.98 3 11 0.00012 0.013 17.1 0.6 1 23 131 154 131 154 0.94 4 11 4.6e-06 0.00049 21.6 2.0 1 23 161 183 161 183 0.98 5 11 0.00038 0.04 15.6 1.2 3 23 191 211 189 211 0.98 6 11 6.5e-06 0.00069 21.1 0.1 1 23 219 241 219 241 0.98 7 11 3.6e-05 0.0038 18.8 4.7 1 23 247 270 247 270 0.96 8 11 0.0003 0.032 15.9 1.4 1 23 276 299 276 299 0.97 9 11 1e-05 0.0011 20.5 1.5 1 23 305 327 305 327 0.98 10 11 4.9e-05 0.0053 18.4 0.4 1 23 333 355 333 355 0.98 11 11 0.00048 0.051 15.2 5.2 1 21 361 381 361 383 0.96
Sequence Information
- Coding Sequence
- ATGGAAATGTTTCGAGAGTGCTTTTCGGTAGAGGCTTTACCGAACGATGGTTTACCCCAAAACTTATGCAATGCGTGCTTTTCaactttggaaaatttttacaatttcaaggAAAAAATTCAAACGTCTGCTCGGATTTTAAGAAATTGCATAAACGAAACTGATGCAGGAAATTCCAACACAAAGGAAAACAATTCAAAAGGAATTGTGAAAAACATGAAGAAAACGTTAACGGACATATCGGTGGATAATGTTGTATTTGGGAAATCAACAGAAAATGTATTCAAATCTAAAGAGAATGATGAACGCGCGTGCCAGGTTTGCAATAAAGCATTCAGTTGCAAAAGGCAATTAACCAGGCATCAAAAAACTCACATCGGAATACGAAGCCATGTTTGTGAAGTTTGTGGAAAAGCCTATATAGAATCCGGATCTCTGAGGAAGCACTTTTTATCGAAACATTCGGGACGAGAGAAACCCCACAAGTGTCCCCAATGTAACCAAAGATTCGATCTACGCTCAACACTAATTAGACACATAAGAATCCACACCGGAGAAAAACCTTTTGGGTGCGACATTTGTCTCAAATTTTATCCTTCCAAATCGTACTTAAGCAAGCATAGAAAGtCCCATTTTGAAAAGCGCAACAAACCATTCATTTGTGAAATATGCAGCAAATCTTTTGCCCTAAAAGACGGTCTGAAAGCTCACCTGATCACTCACACAGATCATCGTCCTCATCAGTGCACGATGTGCGAAAAATGTTTTTCCATGAAAGGGTCTCTTCAATCCCACATCAAATACGTTCACACCAAACAAAAAGATTTCATGTGTCAGTTGTgcgataaaaatttatcatctacGGCCCATTTGAAATTACACGTTCGTTCCGAACATACTGGAGAACGACCTTACCAATGTGACATTTGTACGAAAGCTTTCTTCACCAGTCAAGCTTTGAAAATTCACAAACGATATCACACTGGAGAAAAGCCATATTCGTGTGGTTTTTGTGGAAAATCCTTTGTGACAAACGAACGAGTCAAGGTCCACGAAAGGATTCATACCGGCGAAAGACCTTACAGGTGCACGTTGTGCAGTTCTACCTTTTCGCAAAGTAGTACTCTGAAAACACATATGAAGTGCCATTAA
- Protein Sequence
- MEMFRECFSVEALPNDGLPQNLCNACFSTLENFYNFKEKIQTSARILRNCINETDAGNSNTKENNSKGIVKNMKKTLTDISVDNVVFGKSTENVFKSKENDERACQVCNKAFSCKRQLTRHQKTHIGIRSHVCEVCGKAYIESGSLRKHFLSKHSGREKPHKCPQCNQRFDLRSTLIRHIRIHTGEKPFGCDICLKFYPSKSYLSKHRKSHFEKRNKPFICEICSKSFALKDGLKAHLITHTDHRPHQCTMCEKCFSMKGSLQSHIKYVHTKQKDFMCQLCDKNLSSTAHLKLHVRSEHTGERPYQCDICTKAFFTSQALKIHKRYHTGEKPYSCGFCGKSFVTNERVKVHERIHTGERPYRCTLCSSTFSQSSTLKTHMKCH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -