Lyun014397.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000025.1:2198912-2201878[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.099 11 8.0 4.0 2 23 197 218 196 218 0.96 2 14 0.014 1.5 10.7 0.3 3 23 225 244 223 244 0.92 3 14 0.00039 0.042 15.5 0.5 2 23 250 271 249 271 0.96 4 14 0.011 1.1 11.0 0.6 2 23 277 298 276 298 0.97 5 14 3.8e-06 0.00041 21.9 3.5 2 23 305 326 305 326 0.98 6 14 5e-06 0.00054 21.5 0.9 1 23 332 354 332 354 0.96 7 14 6.9e-05 0.0073 17.9 0.4 1 23 360 383 360 383 0.97 8 14 0.2 22 7.0 4.5 1 23 541 563 541 563 0.98 9 14 0.0043 0.46 12.2 1.5 3 23 571 590 570 590 0.96 10 14 0.00016 0.017 16.7 0.2 3 23 597 617 596 617 0.97 11 14 2.3e-05 0.0024 19.4 1.5 2 23 622 643 621 643 0.97 12 14 0.00043 0.046 15.4 0.3 2 23 652 673 651 673 0.97 13 14 1.3e-05 0.0014 20.1 2.2 1 23 679 701 679 701 0.98 14 14 2.7e-05 0.0029 19.2 0.5 1 23 707 730 707 730 0.96
Sequence Information
- Coding Sequence
- atgCAGGCGGAGTGTCGAACATgcttaaaaaattctgaaaacttgTTGGATATATTTGCCGATAACTTACCCAACAAAATTGCTACAATTTCCTCGGTGGAAATTTTGCCAGATGACGGTCTCCCTAGTAAAATATGTGACGAGTGCATGAAAAACGTACATCTACTGAACAATTTCCGCACCCAAATCATAAAAACCAAGGAGGCCATGGACCAAAATACCAATTTGCAGGGGTTCGAGTGTCGGACGTGTTTGAAAGTTGGATATAAATATTCCAGTGTATTGTCAGACGGTTTACCACACAAAATAGAAACACTCTCTTATGTCGatGTTATGCCAGGTGACCGCTTTTCAAAAAAGATTTGTGACGAATGCAAGGAAAACGTGCACTCCTTGTATCGTTTTCGTAACACAATCATAAAAAGTTACAGGATTTTGGAAGAACGTCGGATTAAGAAAGAGGAGATGGACATTGAAGAAATCAAATTGGAAGAAGAGTTTTGCATGACAGACGAACCTATCTCCACTATTGATCAAACAAAGAAGAAGGTTAAAAAGGCGATTGTAGTACGCAGAATTCATCTGTGCAAGTGTACCATATGCGGTTTTCTAACCCCGCACTACAAAGATTGGCAAAAGCACGTTCGCAGTCATAAAGAACCGACTAGTATCTGTGAATTTTGCggaaaagtgtttaaaaatgtttatttcgcCACTCACGTAATGAGCCATTCAGAAACCTGGTTGTCGTGCAATTTATGCGGACAGAAACTGAAGAATAAGCTTACCCTGCAGGCGCACATCCGGTTGCATAATCAGAAGGAATTGAAGTGTACGGTTTGCGAGGCAGTTTTAAAAAGCAGAAGAGGTTACAGTAAGCACATGCTTAGACACAGAAgagaCAAACCCGAAAAGTGTACGATGTGTGATCGGCGCTTCTATCAGAAATTTGAGCTAAATAAACATATGCGTAGCCACACTGGAGAACGGCCTTATCTCTGTAAGACTTGTAACAAAGGGTTTTCTAGTCCGACAGCTTTAAAGACGCACATAAGGCAACACACTCAAGAGAAACCATTTACATGTGAATATTGCGATGCAGCTTTCAAGCAAGCTGTTTTAGTTAGGCGTCATTTGAAATCGAAACATCCTGATAAAGACTTCTCAGGATGTATTTTCCGAAAACTTACCGCTCAATTAAAGGAAATTGCGTCAGTAGAAatTTTGGAGGACAAGGAGCTTCCATCGAAAATTTGTGATGAGTGCGCGAGAAATGTTCACATGTTTTACGATTTTCGTAATCTCGTCAGAAAAAGTGACCAAGTATTGCGAGAACAAAGTGTAAAACTTGCAATGTTCGACTCTGATGAGTTACCATTTGAAAGTCACCTGGAACCGCATTTGCTTGATGTAAAAAATGAAGAAGTGGAAGAAACGAATGTGGAGTTTGAAGAAGAAACGAATGAAGAGTTTGAAGACGAAACTTTGGCCACCTTAGATGCTCTGTTCTCTGACGAGGTTGATGTCAAAGAAACTGAAAATGATGATTTTCTAGACGGCGTTGTGGTGgttaaagttaaaaacaaaattatgaaatcgaATAAGAAGGACGAACCACGTTACAAGTGTCAGCAGTGTGATTTTACATGTTTTGCGAAAAATTTGTGGCGGAATCATCAACAATCGCATAAaagaaagataataaaaatatgttccATCTGCGGGAAGTCATTACGACATGAGAACTTCAGTAGGCACATGGTAAGCCACGGTGGTCCTACAGTTGCATGTAAAATATGTGGGAAAGTCGTGAAAAACGTAGTTAGTTTACGCTCGCACATGTATTCGCACAGCAGCCCCCTTCAATGTAATATATGTggaaaagtttataaatatcCACCGCATTTTTATGCTCACAGGAAACGACATACACTTGGGGATAAAAAGACGGTGAAATGCGATGTTTGTGGAAAActcttttataataaacaaatgctACCAAAACATATGCAGGTTCATACAGGCGAACGGCCTTATCCTTGTGAGTTTTGCAAGAAAGGATTCTCCAGCAGGTACGCTTTAAAGACGCACAGGAGGCAGCACACCAATGAAAAACCATTTGCTTGTGAATATTGCGATATGGCGTTTCCACAGAGGGTTTCGCTAAAAACTCACCTCAAATCCAAACATCCTGACAAAATTTAG
- Protein Sequence
- MQAECRTCLKNSENLLDIFADNLPNKIATISSVEILPDDGLPSKICDECMKNVHLLNNFRTQIIKTKEAMDQNTNLQGFECRTCLKVGYKYSSVLSDGLPHKIETLSYVDVMPGDRFSKKICDECKENVHSLYRFRNTIIKSYRILEERRIKKEEMDIEEIKLEEEFCMTDEPISTIDQTKKKVKKAIVVRRIHLCKCTICGFLTPHYKDWQKHVRSHKEPTSICEFCGKVFKNVYFATHVMSHSETWLSCNLCGQKLKNKLTLQAHIRLHNQKELKCTVCEAVLKSRRGYSKHMLRHRRDKPEKCTMCDRRFYQKFELNKHMRSHTGERPYLCKTCNKGFSSPTALKTHIRQHTQEKPFTCEYCDAAFKQAVLVRRHLKSKHPDKDFSGCIFRKLTAQLKEIASVEILEDKELPSKICDECARNVHMFYDFRNLVRKSDQVLREQSVKLAMFDSDELPFESHLEPHLLDVKNEEVEETNVEFEEETNEEFEDETLATLDALFSDEVDVKETENDDFLDGVVVVKVKNKIMKSNKKDEPRYKCQQCDFTCFAKNLWRNHQQSHKRKIIKICSICGKSLRHENFSRHMVSHGGPTVACKICGKVVKNVVSLRSHMYSHSSPLQCNICGKVYKYPPHFYAHRKRHTLGDKKTVKCDVCGKLFYNKQMLPKHMQVHTGERPYPCEFCKKGFSSRYALKTHRRQHTNEKPFACEYCDMAFPQRVSLKTHLKSKHPDKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -