Basic Information

Insect: Lycocerus yunnanus
Gene Symbol: -
Assembly: GCA_036346125.1
Location: JARFIX010000076.1:1304377-1305792[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0017 0.18 13.5 5.5 1 23 92 114 92 114 0.98

2 13 1.7 1.8e+02 4.1 1.2 1 23 120 142 120 142 0.88

3 13 6.6e-06 0.0007 21.1 0.1 1 23 148 170 148 170 0.98

4 13 8.3e-05 0.0088 17.6 6.1 1 23 176 198 176 198 0.98

5 13 0.00089 0.095 14.4 3.8 1 23 204 226 204 226 0.97

6 13 6.7e-06 0.00072 21.1 0.5 1 23 232 254 232 254 0.99

7 13 5.6e-05 0.006 18.2 2.2 1 23 260 282 260 282 0.98

8 13 0.00075 0.08 14.6 0.2 1 23 288 310 288 310 0.98

9 13 9.4e-06 0.001 20.6 4.7 1 23 316 338 316 338 0.98

10 13 0.0025 0.27 13.0 7.5 2 23 345 366 345 366 0.97

11 13 3.3e-05 0.0035 18.9 1.2 1 23 372 394 372 394 0.97

12 13 7.4e-07 7.9e-05 24.1 1.0 1 23 400 422 400 422 0.98

13 13 0.00045 0.048 15.3 6.8 1 23 428 450 428 450 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0017	0.18	13.5	5.5	1	23	92	114	92	114	0.98
2	13	1.7	1.8e+02	4.1	1.2	1	23	120	142	120	142	0.88
3	13	6.6e-06	0.0007	21.1	0.1	1	23	148	170	148	170	0.98
4	13	8.3e-05	0.0088	17.6	6.1	1	23	176	198	176	198	0.98
5	13	0.00089	0.095	14.4	3.8	1	23	204	226	204	226	0.97
6	13	6.7e-06	0.00072	21.1	0.5	1	23	232	254	232	254	0.99
7	13	5.6e-05	0.006	18.2	2.2	1	23	260	282	260	282	0.98
8	13	0.00075	0.08	14.6	0.2	1	23	288	310	288	310	0.98
9	13	9.4e-06	0.001	20.6	4.7	1	23	316	338	316	338	0.98
10	13	0.0025	0.27	13.0	7.5	2	23	345	366	345	366	0.97
11	13	3.3e-05	0.0035	18.9	1.2	1	23	372	394	372	394	0.97
12	13	7.4e-07	7.9e-05	24.1	1.0	1	23	400	422	400	422	0.98
13	13	0.00045	0.048	15.3	6.8	1	23	428	450	428	450	0.97

Sequence Information

Coding Sequence: ATGATTAAAGCGGAACTTTCGGAGATATTTCAATATGATGAACAACCCAGCACTTCAGAAGTTACAAGTAATTCGAATAATTAcagttttgtaattaaaatagatGAAGTACCTGACGACGATATCGAGTGCAAGGTGGAAGATGACTTGCATCACGCAATCGACATCAAGGAAGAAGTTCCTACGCTTCAGGTACACGttcaaaaagaagaaaaagtgaAGCTGGAAAAATGTCTCAAAGTTTTGGATGAATTCCACTTCAACGGGAAACGATTTGTTTGTGATCTTTGCAATTATACGTGCACGCGAAAAACTCGTTTAagaagacattttaaaattcacacgGGCGAAAATTTATATCCATGTGAGTCATGTGGAATGAAGTTTTTGTGTAAAAGTAGTTTGGGCAGACACACGGTAATTCACTCgggtgagaaaccatttccgTGTGAAGTATGTGGAGTGAGGTTCTCACAGAAAGGCTATCTTGTAAGTCATTTAATAACTCATACAGGGGAAAAGCCGTTTTCTTGTGAAACTTGTAGCATGAAATTTTCGCGAGTTCATCACTTGCAAAGACACGTaagaactcatacaggcgaAAGACCATTTGAGTGCAATTTATGCCAAATGTCTTTCACTTACAAGCAGACTTTGGACAGACACTTGCATAATCACACAGGCGAGAAGCCTTACGAGTGCGGGCAATGCGGTTTTAAGTTTTCGGCGAAAGCAGATTTGCGAAACCACATGACTACGCATTCCGGGGAAAAGCCGTACACTTGTGAATTCTGCGGTTTAAAGTTTGCTCGTAGTCAATATATGCGAAGACATTTCAGAGTACACACTGGGGAGAAGCCTTACTCGTGTGAAGTTTGCGGTTTAACGTTTGCAAACGGCACCATCTTAAAAAAACATCTATTGactcacaccggcgagaaacctCACCAGTGCAAGGTCTGCCTAAGGAAATTTACACAGAGAAGTAATTTGATGAGTCATCTAAAAACTCATGACGGAGTAAAATCGGAAGAATGCGAAGTTTGTCATATGAAATTTGCACGGAAGCAGCACCTACATCGGCATAAGTTGACCCACTCGGGTGAGAAACGTTTTGCATGTGAACTATGCGATATGAAGTTTTTACAAAGGGACAGTTTACGACGACACATGAGAAGGCACACCGGTGAAAAAACGTACGAGTGCGAAATTTGTCACATGAAATTTTCGCAAAATCCAAACTTGAAGAGTCATATGATTGTTCACACCGGGGTGAGGCGTTttgattgtaaaatttgcaatttgaagtttaccCGAAAGCATCACTTGGATCGACATTTTGAAACCCACATTCACAAGGCTAAACTTGTCGAAGTTCAACGGTCTATGCAATGTGATACAATAGATACGGTATGA
Protein Sequence: MIKAELSEIFQYDEQPSTSEVTSNSNNYSFVIKIDEVPDDDIECKVEDDLHHAIDIKEEVPTLQVHVQKEEKVKLEKCLKVLDEFHFNGKRFVCDLCNYTCTRKTRLRRHFKIHTGENLYPCESCGMKFLCKSSLGRHTVIHSGEKPFPCEVCGVRFSQKGYLVSHLITHTGEKPFSCETCSMKFSRVHHLQRHVRTHTGERPFECNLCQMSFTYKQTLDRHLHNHTGEKPYECGQCGFKFSAKADLRNHMTTHSGEKPYTCEFCGLKFARSQYMRRHFRVHTGEKPYSCEVCGLTFANGTILKKHLLTHTGEKPHQCKVCLRKFTQRSNLMSHLKTHDGVKSEECEVCHMKFARKQHLHRHKLTHSGEKRFACELCDMKFLQRDSLRRHMRRHTGEKTYECEICHMKFSQNPNLKSHMIVHTGVRRFDCKICNLKFTRKHHLDRHFETHIHKAKLVEVQRSMQCDTIDTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00268860;
90% Identity: -
80% Identity: -