Lyun028323.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lycocerus yunnanus
Gene Symbol
-
Assembly
GCA_036346125.1
Location
JARFIX010000093.1:722715-741755[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00013 0.014 17.0 0.3 1 23 62 84 62 84 0.98
2 14 6.3e-05 0.0067 18.0 1.7 1 23 176 198 176 198 0.98
3 14 4.8e-06 0.00051 21.5 0.1 1 23 204 226 204 226 0.97
4 14 1.7e-06 0.00018 23.0 0.9 1 23 232 254 232 254 0.99
5 14 0.00027 0.029 16.0 3.9 1 23 380 402 380 402 0.97
6 14 0.0001 0.011 17.3 0.3 1 23 408 430 408 430 0.98
7 14 3.4e-05 0.0036 18.9 6.8 1 23 436 458 436 458 0.98
8 14 0.1 11 8.0 3.8 3 23 466 486 466 486 0.98
9 14 0.00038 0.041 15.6 4.3 1 23 492 514 492 514 0.97
10 14 0.0058 0.61 11.8 6.4 2 23 521 542 520 542 0.96
11 14 0.0006 0.064 14.9 4.6 1 23 548 570 548 570 0.97
12 14 5.8e-05 0.0062 18.1 0.2 1 23 636 658 636 658 0.98
13 14 0.00021 0.023 16.3 1.2 1 23 690 712 690 712 0.99
14 14 1.7 1.9e+02 4.0 0.5 3 19 720 736 718 739 0.92

Sequence Information

Coding Sequence
ATGGAAACAGTTGTACCATCAGATAACATAAAGCAAGAGCCTGTGGAAGACATTAAATTCAACATAGAAGATTTGCATTGCTCGATTGATTTTGATGATAAGCACGATATTAAATTTAGCGTAGAAGAATTGCATCACacgattgatattaaagaagagtTGGAAACACAAGTACATGAATTATTCGAATGCGAGGTGTGTAAAGTTACACTTAAAGATAAGTCGCAACTCATGATACATGCAAGGAGTCATAACGGCCCTAAACGGTTCATCATTGTTTTAATTGGTAAACATAACCTCAATAAATCGTTGTCATGGTGTAAGCAGAAATTTATTAACGAATTTATATTTATCGGCAAAATGGAAGCAGTTGTACCACCAGAAGAGTGCCATGAAGTAAAGGAAGAGTACTATGAAGTCAAGGAGGAGCCCGTGGAGGACATCAAATTCAACATAGAAGACTTACATCActcgattgatattaaagaagaaccTACTACTTTGAAAGGGAAAAAATGTAAACTATTCAAGTGTGGGGTATGTAACGTCAAGTTTAATTATAAGTTCCAGCTCACGAAGCATGCAAGAATTCATAGCATCTCGAACGGGTTTATTTGTGCCATATGCGACAAAAGGTTTTCTCGTAAAGACGGATTGATAGTACACTTAACTATTCACACGGGAATCAAACCATTTACATGTGAAGTTTGCGATTTTAAATTCGCAGTGAAATCGAAGCTTAATGTGCACATGCGAACACATACCGGAAAATGGATAAGAAGATCTGGATTAATCAATTGGCCAGCCAGATCTCTCGATTTAACTCTTCTCGATTATTTTTTGTGGGGTGTCATTAAAGCTATGGTTTACCGCAATAGAAGAAATACAGACAACAGAGAGGAATTCATGGAAAGAATACCGATAGCTGTGGCGAAACTTAGTaagagaTACCATTTGAATGTAATGGAGAATCGGGGGAACGTCAATTCATTTACTCCTCATATCGAGAAGAAGCTACTATTGGAACAACATTATGAAATAATGAAGGAAGAAGTAGGGCGAAACACAGAATATAACTCGATTGGTATTAAGGAAGAACGACCATCTGCTTCGTCTGTCATTGTTAACGAGAAACCATTTGCATGTGAAGTTTGCCATTATAAATGTTCGAACAAGCCACTTTTGAAACGGCACATGGTAACCCATACAGGCGCGAAACCTTTCACTTGTgcaatttgtgactttaaaactGCACGTAAAGGTAATTTGATAtatcatttaagaattcatacaAACGATAAGCCGTTTTCTTGCGAAATATGTGTTTATAAATGTTCAACGAACTATCATTTGAAACGGCATATGAGAACTCATACCGGAGAGAAGCCGCTCGGTTGTGATATTTGCGAGTACAAATGTACAGCCAAGCGGGATTTGATGGTGCACATGTGCAATCACACCGGCTCGAAACCGTTCGCATGCacaatttgtgactttaaaactGCACGTAAGCAGCATTTGACGcatcatttaagaattcataccGCTGATAAGCCTTTATGTTGCGAAGTATGTGCCTATAAATGTTCAACCAAACAACATTTGGAACAGCACATTAGAAcccataccggtgagaaaccgttcgcCTGCGATGTTTGCGACTACAGATGTTCGTTGAAACAACATTTGAAACGACACATATCAACGCACACCGGCGAAAAACCGTTCATGTGtgcgatttTTGTGCTGAAAATCACCATGGAACCCTTTGAACAGTGTGACGTCAAAGAAGAAGTTGTGGAAGACATCAAATTTAATgtggaagatttgcatcactcgattgatattaaagaagaaaagtTTTTTGACCTGGTCGTAAAACCAGAGACACAAGTATGTAAATTATTCGAGTGTGGGGTCTGTAACGAAAAATTTACTCTCGAATCACAACTAACACAACATGCAAGAATCCATACCGAACCGAAAGGATTTGTTTTGACCGATGGGGACATTTCCAGTAAAGACGGCTTCAAAATTCGTGTAACGACTCACACTGGCATCAAACTGTACGAGTGCGAAGTCTGCGACTTCAAGTGTCCAATCAAGCAAAGTTTAATTCGTCAcataagaactcacactggtgaaaaGCCATTTGGGTGTCCgtattgtgaatttaaaagtgCACGTAAATATACCGTGAAGGAACATTCAAAATTCACACGGATGAGAAACCATATGCTTGTGGAATGTGTAACTGCAAGTGTACAACTGAACAGAACTTGA
Protein Sequence
METVVPSDNIKQEPVEDIKFNIEDLHCSIDFDDKHDIKFSVEELHHTIDIKEELETQVHELFECEVCKVTLKDKSQLMIHARSHNGPKRFIIVLIGKHNLNKSLSWCKQKFINEFIFIGKMEAVVPPEECHEVKEEYYEVKEEPVEDIKFNIEDLHHSIDIKEEPTTLKGKKCKLFKCGVCNVKFNYKFQLTKHARIHSISNGFICAICDKRFSRKDGLIVHLTIHTGIKPFTCEVCDFKFAVKSKLNVHMRTHTGKWIRRSGLINWPARSLDLTLLDYFLWGVIKAMVYRNRRNTDNREEFMERIPIAVAKLSKRYHLNVMENRGNVNSFTPHIEKKLLLEQHYEIMKEEVGRNTEYNSIGIKEERPSASSVIVNEKPFACEVCHYKCSNKPLLKRHMVTHTGAKPFTCAICDFKTARKGNLIYHLRIHTNDKPFSCEICVYKCSTNYHLKRHMRTHTGEKPLGCDICEYKCTAKRDLMVHMCNHTGSKPFACTICDFKTARKQHLTHHLRIHTADKPLCCEVCAYKCSTKQHLEQHIRTHTGEKPFACDVCDYRCSLKQHLKRHISTHTGEKPFMCAIFVLKITMEPFEQCDVKEEVVEDIKFNVEDLHHSIDIKEEKFFDLVVKPETQVCKLFECGVCNEKFTLESQLTQHARIHTEPKGFVLTDGDISSKDGFKIRVTTHTGIKLYECEVCDFKCPIKQSLIRHIRTHTGEKPFGCPYCEFKSARKYTVKEHSKFTRMRNHMLVECVTASVQLNRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-