Basic Information

Insect: Lycocerus yunnanus
Gene Symbol: Psf2
Assembly: GCA_036346125.1
Location: JARFIX010000005.1:1906063-1911080[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.6e-05 0.0028 19.2 3.5 1 23 262 283 262 283 0.98

2 10 5.3e-07 5.6e-05 24.6 1.1 1 23 289 311 289 311 0.99

3 10 2.4e-05 0.0025 19.4 0.2 1 23 317 339 317 339 0.97

4 10 1.6e-06 0.00017 23.1 2.3 1 23 354 376 354 376 0.99

5 10 2.1e-05 0.0022 19.5 4.8 1 23 404 426 404 426 0.98

6 10 1.3e-05 0.0013 20.2 0.2 1 23 431 453 431 453 0.95

7 10 0.0025 0.27 13.0 3.2 1 23 459 481 459 481 0.96

8 10 1.4e-06 0.00015 23.2 2.1 1 23 487 509 487 509 0.99

9 10 9.3e-07 9.9e-05 23.8 0.7 1 23 515 537 515 537 0.99

10 10 1.5e-05 0.0016 20.0 1.4 1 23 543 565 543 565 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.6e-05	0.0028	19.2	3.5	1	23	262	283	262	283	0.98
2	10	5.3e-07	5.6e-05	24.6	1.1	1	23	289	311	289	311	0.99
3	10	2.4e-05	0.0025	19.4	0.2	1	23	317	339	317	339	0.97
4	10	1.6e-06	0.00017	23.1	2.3	1	23	354	376	354	376	0.99
5	10	2.1e-05	0.0022	19.5	4.8	1	23	404	426	404	426	0.98
6	10	1.3e-05	0.0013	20.2	0.2	1	23	431	453	431	453	0.95
7	10	0.0025	0.27	13.0	3.2	1	23	459	481	459	481	0.96
8	10	1.4e-06	0.00015	23.2	2.1	1	23	487	509	487	509	0.99
9	10	9.3e-07	9.9e-05	23.8	0.7	1	23	515	537	515	537	0.99
10	10	1.5e-05	0.0016	20.0	1.4	1	23	543	565	543	565	0.97

Sequence Information

Coding Sequence: ATGAATCCggaagaaattgaatttttagcggaaaaagaagaaattagtATTATTCCGACGTTTAATAATGGTGCAATACATTTAATTTCCGGCGACGTGGGACCATTTAGGGCAAGTCTTCCAGTTCGTGTGCCTTTATGGATGGCAGTTCATTTAAAGCAAcaaagaaaatgcaaaattcaaCCTCCAGATTGGATGGACGTAGACCGATTAGAATCAATACGTGAGGAGGAGAAAAACTCACCgacttttataaaaatgcctAGCGAACATTACATGATTGAAGCTAAATTGTTATTAGGTTGTGCCACGGATGATATATTAAGATCAGAAGAACTTAGAACAATAATAAAGGATATTTGGGATATTCGGATGTCTAAGATAAGATCGTCTGTTGATACCTTAATTAAGAATGGTGGAGCGTATGCTGCTATAGATAATTTGACTCTTTTGGAAATTAATTCTATGCGACCTCTCTTACCTCACGCCATGGATCACATTTACCGAATGAAAaaggtgAAATTATCGAGGGTCAAATTACCGGAGAGCAAATTACCGAGAATGAAATTACCAGGGGACAAATTACTGGAAGTGAAATTACCAGGGAATCAAAGTACCTGGGGGCGAGATTATGGGGAACGAAATTATCAGGGACCAAATCACCCGAGGGGTCCTGAATTGAATAGTGAAAATAATGTAGTAGAAAACGAAGAGGAAGAGGAGCAGGATGAGAATGATGAAGAAACTGTGAAAAATCGGATGAAGAAGTTAGAAATTCGTAAACACGAGTGTCCCACTTGTTTCAAGTCCTTTACGAGCAGTAAATTAAGGCAGCATATGCGAGTTCATACCAaagaaaaaccttttaaatgCCAAGAGTGCTCGAAAGCATTTAGTATGTCCGGTAATTTAAAAAGACACGTGATGACCCACACCGGGGAGCGACCGCACATTTGCGAAATTTGTGGAAAAGGGTTTATTCAGGCCGTTACGCTGGCAATTCATAAAAAAACACATGTAATTCACGAAGCAATTGATATTACAAGTGGTACACCGAATTTTACATGTTCGTATTGTGGGAGAGGTTTTAAACGTGTGTCATCTTATAATACGCACATCAGGAAGCATAGAAATAACCAGAATGAAACACCAAATGACAGTATTAAAAAGTGTGAAGATATCTCGTTTGAAGaactaaattatgaaatttacgAATGCTCCATATGTAAGAAGAGTTACAAAACTAAGCATTTACTCAAATCTCACCAATTGTATCACGGTGAAAAGACGTTCTTGTGCAACGAATGTGGTAAAGGATTTGTAACCAAGGCAGCTATGCAGTCACATTTGAAAGTGCATACTGGAGAAAAACCACACaattgcaatatttgttacaaatCCTTTGCACATATTACTAGTTTTGAATCGCATTTATTGATTCACTCGGGCACAAAGCCATACGTCTGTAGTGCATGCGGAAGAGCTTTTACCCAGTTGACTCATTTGAAATATCACATGCGCACGCATAGTGGTGAAAGACCATATGAGTGCAGTTACTGCAATAAACGATTTGCATTAAAAGGAAATTTGACTGTTCATGTGCGTATGCACACCGGAGAAACACCATATGTGTGTTCTATTTGTAATAAAGGCTTCTACGACTCGAGCAGTATGAAAAAACATAAAAAGGGACATGCGAAACCTCAATCACAATCTgggaaaaaagaagaaattagtATTATTCCGACGTTTAATAATGGTGCAATACATTTAATTTCCGGCGACGTGGGACCATTTAGGGCAAGTCTTCCAGTTCGTGTGCCTTTATGGATGGCAGTTCATTTAAAGCAAcaaagaaaatgcaaaattcaaCCTCCAGATTGGATGGACGTAGACCGATTAGAATCGATACGTGAGGAGGAGAAAACTCACCGACTTTTATAA
Protein Sequence: MNPEEIEFLAEKEEISIIPTFNNGAIHLISGDVGPFRASLPVRVPLWMAVHLKQQRKCKIQPPDWMDVDRLESIREEEKNSPTFIKMPSEHYMIEAKLLLGCATDDILRSEELRTIIKDIWDIRMSKIRSSVDTLIKNGGAYAAIDNLTLLEINSMRPLLPHAMDHIYRMKKVKLSRVKLPESKLPRMKLPGDKLLEVKLPGNQSTWGRDYGERNYQGPNHPRGPELNSENNVVENEEEEEQDENDEETVKNRMKKLEIRKHECPTCFKSFTSSKLRQHMRVHTKEKPFKCQECSKAFSMSGNLKRHVMTHTGERPHICEICGKGFIQAVTLAIHKKTHVIHEAIDITSGTPNFTCSYCGRGFKRVSSYNTHIRKHRNNQNETPNDSIKKCEDISFEELNYEIYECSICKKSYKTKHLLKSHQLYHGEKTFLCNECGKGFVTKAAMQSHLKVHTGEKPHNCNICYKSFAHITSFESHLLIHSGTKPYVCSACGRAFTQLTHLKYHMRTHSGERPYECSYCNKRFALKGNLTVHVRMHTGETPYVCSICNKGFYDSSSMKKHKKGHAKPQSQSGKKEEISIIPTFNNGAIHLISGDVGPFRASLPVRVPLWMAVHLKQQRKCKIQPPDWMDVDRLESIREEEKTHRLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -