Lyun012646.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000021.1:2939014-2943806[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00077 0.082 14.6 3.3 1 23 25 47 25 47 0.96 2 20 3.1 3.3e+02 3.2 0.4 12 23 131 142 120 142 0.85 3 20 3.7e-06 0.00039 21.9 1.3 1 23 210 232 210 232 0.99 4 20 0.0019 0.21 13.3 0.4 1 23 236 258 236 258 0.98 5 20 3.7 3.9e+02 3.0 1.9 1 23 264 287 264 287 0.94 6 20 0.013 1.4 10.7 3.1 1 23 293 315 293 315 0.95 7 20 0.004 0.43 12.3 1.3 1 22 321 342 321 344 0.90 8 20 0.00027 0.029 16.0 5.2 2 23 352 373 351 373 0.97 9 20 4.3e-05 0.0046 18.5 0.3 2 23 379 400 378 400 0.97 10 20 3.4e-05 0.0036 18.9 0.9 2 23 491 512 490 512 0.96 11 20 0.032 3.4 9.5 0.0 1 23 532 554 532 554 0.96 12 20 0.38 41 6.1 3.7 1 23 558 580 558 580 0.95 13 20 0.0079 0.84 11.4 0.7 1 23 586 609 586 609 0.97 14 20 0.00032 0.034 15.8 0.3 1 23 615 637 615 637 0.97 15 20 0.00043 0.046 15.4 2.0 1 23 643 666 643 666 0.95 16 20 3.1e-06 0.00033 22.2 3.2 2 23 674 695 673 695 0.97 17 20 7.3e-06 0.00078 21.0 0.7 3 23 710 730 708 730 0.96 18 20 1.4e-06 0.00014 23.3 1.2 1 23 736 758 736 758 0.98 19 20 2e-05 0.0022 19.6 0.2 1 23 764 786 764 786 0.98 20 20 0.0067 0.71 11.6 0.8 1 21 792 812 792 813 0.96
Sequence Information
- Coding Sequence
- ATGGACTTGTTAAGACCTGAGGAAATAAAGCTTGAATGTGAAATTAACGAAGACGAGAGTTTTACAAATGTGCACTCTTGTCAAATTTGTAGTAAAAACTTTGCGCACTCAAACGATCTTCAAATGCATTTAAGTTTACACCGAGGAATgggtaataatattaaaaaagatgTCCAAAATAGTTCGAGTGAGGacgataataattttgaaaatgaaaatttgggaATTAGCTCGGACGATGAAGACGACGAGCTGGAAATTGCGTTGGATGACGATAAATCTTTAGTAACGGAAGAATTGAAGAAAATCTTACAATCCCAAGTGCAGTCTGGTGAAtgttctataaattttttaccctCCTGTGCATTATGTAACAACGGCAAAGTTATGACTAAAAAGCAATTGGCTCGTCATTATAAACGACATGAAAAGTTTCTTTCGAATCTAACGGAAGATGAACATAATAAGTCGCAATATTATTGCCATATTTGCAAGGACGATCGGAAAATGACCAGGAACGAGTTGAGGGAACATCACCAAGCAATACATGAAACAAAGATTACTAACAAGAGGCAGTTCTTTAGAAGGGCCTTATCGAAACATCCACGCTCACCTCGACCGGAGGTCTTTCGATGTGAAATTTGTTCCAAGGAATTTGATAGTCAGAAAAATTTGGATAAACATCTTAATACTCACGATAACCAGTATTCTTGTGATACTTGCGGTGAAGGATTTAAAAAGATTATCGATTATACCCTTCATTTGCAGAAGCACAGCGAAGATAAACTATTTAAGTGTTTGTTGTGCCAGTTTGTTACCAACCGAGGTCATTTAGTAAAGTCACATTTGTATTCCGTTCACGAACAATTTAAGAAGTACAAGTGTGAAATGTGCGGTAAAGGGTTTGCTATTTTTACCCACTTCCAGGAGCACAAATACTATCATACCGGTGAAAAGCCTTTTCAGTGTGACATTTGCGGTCAGAAGTTCATGTACACCCGTTACTTGAACTCGCACAAGGTCCAAATGCATAAAAGTGAATCGAAAGGGATCGAGTGTAAAATCTGCAAGAAAATTTATTCCCATAGGAACAGTCTGCATACGCACATGAAGTCGCACACCGGAACCGTATCGGTGTGCGACGTTTGCGGAAAAACGCTGAGCAGTAACGAAAAACTACGTCTTCATTACCGAATTCATACCGGGAAAAGCCGTATAAGTGCGAATATTGTGACAAAATGTTCAAAACTAGTTCTTATCGTGCCGAGCATGAGAGGATccacacaggtgagaaacctTATCAATGCCCACACTGCGGAAAAGGCTTTTCTCAACGCACCAGTATGGTTATACATTCACGTGGACATACAGGCGAAAAACCCTATTTGTGtcatttatgtaataaaggCTTTGCCGCAAAATCCATGggtATTCGTAAAATTGGAAATGGGAAAAATGAAACACAAATGGAGCTGCACTAAGTGCGATGAAGTTTTTAGTACGTCGATAAAGCTACGAAGTCATCGAAAGGTTCACCGCCAAGAGGAAAGCGACGTTCACTATAACTATAGATTTGACGATGATCGGAACTTGTACATTTGCAACACTTGCGACACCGAAATTTCGAGTAAGGAAGAAATTGAGAATCATATAATAGAACACGAAGATAAATTTGTGtgtgaaatttgcaaacagAATTTCTATAAGCCATACGAGTTCTCCTGTCATATTTACAAACACGATCCGAAGAAAGGATTTAATTGTCCTTTGTGTAAATACGAAACCAACAGACGGACGGACATATGGAAACATATTAAAATAAGacatttacataaatataaatataattgtgTTAAGTGTGGAAAAGGATTCACAAATCGTGTGCTTTACACGGAACATGGTAACATTCACGAAGGAGTTAAACCGTTTGTATGTGTAGTTTGTTCAAAATCGTTTGTGTATTCTAGCTATTTGTACAATCATCAAATTCACAATCACCTGGTCAATATTGGGGCTACTCAGTGCaccatttgttttaaaagttttgtgcagaaaaaaagTTTGAGGAAGCACTTGCGAAGTCACGAAATGATGAGCGAAAAATTGAATAAGGAAAAGAAACATTTGTGCGATATTTGTGGAAAAGGTTTTGCCCAAAatgaaaaactcaaaattcatTATCGTGTTCATACCGGAGACAAACCGTATTCTTGTTCGTATTGCGGGAAAAGCTTCACCAAAAGAGACTATTTGGTTATGCACGAACGGGTTCATAGTGGAGAGAAGCCGTACGCGTGTGAATATTGTGGAAAACGGTTTAACCAAGGAGCTCCTTTAAGACTCCATATTAGAAGCCATACTGGTGAACGGCCCTATAAATGCCATTTATGTAACAATGGCTTTATTTCACGCAGCGTTCTGAATTTGCATCTTAAAAATTGCTTAGGAATATCTGATTAA
- Protein Sequence
- MDLLRPEEIKLECEINEDESFTNVHSCQICSKNFAHSNDLQMHLSLHRGMGNNIKKDVQNSSSEDDNNFENENLGISSDDEDDELEIALDDDKSLVTEELKKILQSQVQSGECSINFLPSCALCNNGKVMTKKQLARHYKRHEKFLSNLTEDEHNKSQYYCHICKDDRKMTRNELREHHQAIHETKITNKRQFFRRALSKHPRSPRPEVFRCEICSKEFDSQKNLDKHLNTHDNQYSCDTCGEGFKKIIDYTLHLQKHSEDKLFKCLLCQFVTNRGHLVKSHLYSVHEQFKKYKCEMCGKGFAIFTHFQEHKYYHTGEKPFQCDICGQKFMYTRYLNSHKVQMHKSESKGIECKICKKIYSHRNSLHTHMKSHTGTVSVCDVCGKTLSSNEKLRLHYRIHTGKSRISANIVTKCSKLVLIVPSMRGSTQVRNLINAHTAEKAFLNAPVWLYIHVDIQAKNPICVIYVIKALPQNPWVFVKLEMGKMKHKWSCTKCDEVFSTSIKLRSHRKVHRQEESDVHYNYRFDDDRNLYICNTCDTEISSKEEIENHIIEHEDKFVCEICKQNFYKPYEFSCHIYKHDPKKGFNCPLCKYETNRRTDIWKHIKIRHLHKYKYNCVKCGKGFTNRVLYTEHGNIHEGVKPFVCVVCSKSFVYSSYLYNHQIHNHLVNIGATQCTICFKSFVQKKSLRKHLRSHEMMSEKLNKEKKHLCDICGKGFAQNEKLKIHYRVHTGDKPYSCSYCGKSFTKRDYLVMHERVHSGEKPYACEYCGKRFNQGAPLRLHIRSHTGERPYKCHLCNNGFISRSVLNLHLKNCLGISD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -