Lyun012649.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000021.1:2969403-2991514[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0054 0.57 11.9 1.2 1 23 15 37 15 37 0.98 2 24 6.6e-05 0.007 18.0 1.5 2 23 43 65 42 65 0.95 3 24 0.00027 0.029 16.0 0.2 1 23 71 94 71 94 0.97 4 24 0.0019 0.2 13.4 4.5 1 23 100 122 100 123 0.96 5 24 0.00031 0.032 15.9 1.7 1 23 128 150 128 150 0.98 6 24 0.0057 0.6 11.9 5.2 1 23 159 181 159 181 0.98 7 24 0.0014 0.14 13.8 0.1 1 23 187 209 187 209 0.97 8 24 0.035 3.8 9.4 1.5 1 23 270 292 270 292 0.98 9 24 0.0027 0.29 12.9 0.5 3 23 297 320 296 320 0.91 10 24 0.089 9.4 8.1 0.1 1 23 326 349 326 349 0.95 11 24 0.0029 0.3 12.8 4.0 1 23 355 377 355 378 0.96 12 24 0.014 1.5 10.7 2.0 1 23 383 405 383 405 0.98 13 24 0.0018 0.19 13.4 0.2 1 23 414 436 414 436 0.98 14 24 0.03 3.2 9.6 0.1 1 23 442 464 442 464 0.97 15 24 0.00017 0.018 16.7 3.2 1 23 470 492 470 492 0.98 16 24 1.3e-05 0.0013 20.2 7.0 1 23 498 520 498 520 0.98 17 24 0.086 9.2 8.2 0.6 1 14 526 539 526 540 0.91 18 24 1.9 2e+02 3.9 0.2 3 23 614 634 612 634 0.90 19 24 0.0023 0.25 13.1 1.2 1 23 653 676 653 676 0.96 20 24 0.0028 0.3 12.8 0.7 1 23 738 760 738 760 0.98 21 24 0.00067 0.071 14.8 0.9 1 23 766 789 766 789 0.98 22 24 0.00023 0.025 16.2 2.5 2 23 801 822 800 822 0.98 23 24 8.4e-05 0.0089 17.6 1.6 3 23 830 850 829 850 0.98 24 24 3.9e-06 0.00042 21.8 0.8 1 23 856 878 856 878 0.97
Sequence Information
- Coding Sequence
- ATGAAAACCGAAGCAAATGATGATAATACAAATCAAAATGTTTACATGTGtaaaaaatgtgatttatttCTAGAAAGtgcggaaaaattaaaatcgcacTCGCGCACACACAAAGAAAAAAACTGTGAGTGTACCATTTGCAAAAAGAAGTTTCCCTATCCGTATTTATTGACTTTACACATAAAATCGGTTCACGAAAATCAGCGTCCGTTTTCTTGCGAAGAATGTAACACCGGTTACGCAACGAAAGCTTTGCTGAGATCTCACGTGAAAATGGTTCAttcgaaaatttacaaatacaaatgCGATAAGTGCGATAAGCGTTACAATATGAAGAAAACGTTTGAAAATCACTACGCCGTACATCACGAGGGGACCAGATACGAATGCGAACATTGTGGTAAACAATACATGGATCTTTATTATTACAGAGCACACTTGCTCTCCCACGATCCAAATTATGTAAGCAAAAAGTACATCtgtgaaatttgtaacaaaGAATTGCACCATTCTGGTTCCTACCACAAACACATGAGGATTCATAGTGGGAAAAACAAACACGTCTGTGAACTTTGTGGAAAAGTTGTGGGATCCGTTGCCAGTTTACAAGACCACATGAATTTGCACAAGGAATCAAAACGCACGTCTGCCATGTCTGCGGGAAAGGATTTGTTAAGaagcaaaatttggatttacaTAAACGAACCCACACGAAAGAAAAACCCTACGAATGCGACATATTTGGAATTTAATGATGAATTTACGATGAAAATTGAAGCAAATTATGATAATGCAAATCGTAATATTTACATGTGTaggaaatgtaatttatttctagaaagtgcagaaaaattaaaatcgcacTCGCGCACACACAAAGAAAAAAACTGCGAGTGTATCATCTGCAAAAAGAAGTTTCCCTATCCTTATTTGTTGGCTTTGCACATAAAATCGGTTCACGAAAATCAGCGTCCGTTTCTTTGCGAAGAATGTAACACCGGCTGGGCAACCAAAGCTTTGCTGAGATCTCACGTGAAGACggttcatttgaaaatttacaaatacaaatgCGATAGGTGCGATAAGCGTTATAATATGAAGCAAAAGTTGCAAAGTCACTACGCCGTACATCATGAAGGGACCAGATACGAATGCGAACATTGTGGTAAACTATACATGGACTTTAATTCTTACAGACTCCACTTGCTCTCCCACGATCCAAATTATGTAAGCAAAAAGTACATCTGTGAAGTATGTAACAAAGAATTGGGCAATGCTGGTTCGTACCGCAAGCATAAAAGGATTCACAGTGGGAAAAACAAACATGTCTGCGAACTTTGTGGTAAAGTTGTGTTATCCATTGCCAGTTTAAAAGACCACATGAATTTGCACAAGGGAATCAAAACTCACGTCTGCCATGTGTGTGGGAAAGGATTCGTTAAGaagcaaaatttggatttgCATAACCGAACCCACACGAAAGAAAAACCCCACAAATGCGACGTATGCAAAAAATGTTTCAGCCAGAGGAGCTCTCTTAAAATACATCTTAGGTATCATAGTGGGGAAAAACCGTTCAAATGCGAAATTTGTCAAAAATCTTATGTAACTAAAGCCACGTCCGAAATTTCCATATTTCCAGTTGTGAAGCAAGAAACGTTTTCCGATTATGACGATTATCGAGAAGACGTAAAACACGAAGAAGTGACGACAAAAAGGGGTAAAAGATCCAAAAAACCTACAGTGGGGTACGTAAATCCATTTGTTTACACAAACttgaagaaaaacaagaaagcCAATAAGGAGTTTAAAGCGGAAGGAATTGGAAACAAATGGAATTGTATAATTTGTAACCAAACTTCGCAAAATAAAGAAGCCTTGATTAGTCATTACGAACAACATAAAAACGAATGCGAAAATAGCAAGGACCTAAAAAGCGAAAACGTGTGCGATTATTTTCGGTGCGTTATTTGTTCGCGCGAATATACTTCCGCGAATGCTTACAAAAAACACTTGAAGCTCAAACACGGCGACAATTTTTACACTTGCGATAGCTGCAGCAAATCTTATAAAAACGCACTTTATCTGTGCTTTCACAATTTTAGCTGCCATTCAAATGACGGACACTACGTATGCATcgtatgcaattttaaaaccgaCTCCAAGGATGTCATAAAATCGCACATTCAGGATCACGAAAGTAATTCCAATTTTCAGTGCGATGTGTGCGATAGAAAGTTTCTAACGTCTGCTTGGTTtgaagagcataaaaatactcACGTTGGAGCAATGCCCTATCAGTGCGAAATTTGCCTTCAAAATTTTCCGAATTCCCGTTACTTAACCTTGCACAGAAAAAGTTTACACTTGAATGCCACTTACACGAATATGCTGACAAATAAGTGCGACTTGTGCGAAAAACAATTCGCCCAtaaaaaaagtttgattttgcACCTTCGTTCCCACACCGGTGAAAATACTGTTTTGTGCGATATGTGCGGAAAAAGTTTATCCAGCACCGAACACCTTCGGCAACATTTACGTATTCACACAGGTTATAAGCCACATATATGTTCGGTGTGTGGTAAAGGATTTGCCAAAAAGAGTAATTTAACTTTACACGAACGCGTCCATAGTGGCGAAAAGCCGTACGTTTGTGGAACTTGTTGCAAATGTTTTTCTCAACGTTCCACTGATTATTCTGACGATGGCGACAATAACATCTATAATGGAAATAGTTCGTACAAACCAAATGGAGCAAAGAGAAAATGTATTGGCGACATGTTTGTTCCTAATTCAGAAAATCTTAAATATTCTGAAGTTGTAACACCTCGTTCTTCTGAAAGTAGTGGAACGCCACTATCGCCCAAACTGTCTGACGGACCCCCTTCAAAATTATACAACGGCTTTGATTCTATTGCATCCAATCTAGAACATTTCCAACAAATTATAACTGCAATGGAAAATATGAACGCCGTACAAAGCCATATGTGTGAGAAAATTGATCAAATGCACAGAGTTATCATGATTACAAGCGACACCAATTCAGTAGCACCCACGAATCTTCCTGTGACTCCATTGGACACTGCTGAGGATTTTCTGGAAATggaaacatttttagaaaatcccgacaattttcattatttcATTAATCGCTTATCAGTTGTTGGGGGTAGAGGCGTTTCGAATTCTACAATGAATGTTATGAAATATCTCCTGACAGATAAATTAGCATCTCACTACAATTGGGCAGGGCGACAAAGAAAGGGTGGAAAAAAGAAATTACCCTTTCAGAAGACTAAAACCATGGAAGCTGTTTACGCTTCAATTAAATTAGCTTATGCAAAAATACTGCCATCTGATTTGAAGGATAAATGTATAGGAAATTATGTAAAAGAGTGGCTGAAACTAGCACCACAGCGGTTcgacaataaaaataagaaaaatagtaATTGTCAAAGTGAAAAGaagtgtattttttaa
- Protein Sequence
- MKTEANDDNTNQNVYMCKKCDLFLESAEKLKSHSRTHKEKNCECTICKKKFPYPYLLTLHIKSVHENQRPFSCEECNTGYATKALLRSHVKMVHSKIYKYKCDKCDKRYNMKKTFENHYAVHHEGTRYECEHCGKQYMDLYYYRAHLLSHDPNYVSKKYICEICNKELHHSGSYHKHMRIHSGKNKHVCELCGKVVGSVASLQDHMNLHKESKRTSAMSAGKDLLRSKIWIYINEPTRKKNPTNATYLEFNDEFTMKIEANYDNANRNIYMCRKCNLFLESAEKLKSHSRTHKEKNCECIICKKKFPYPYLLALHIKSVHENQRPFLCEECNTGWATKALLRSHVKTVHLKIYKYKCDRCDKRYNMKQKLQSHYAVHHEGTRYECEHCGKLYMDFNSYRLHLLSHDPNYVSKKYICEVCNKELGNAGSYRKHKRIHSGKNKHVCELCGKVVLSIASLKDHMNLHKGIKTHVCHVCGKGFVKKQNLDLHNRTHTKEKPHKCDVCKKCFSQRSSLKIHLRYHSGEKPFKCEICQKSYVTKATSEISIFPVVKQETFSDYDDYREDVKHEEVTTKRGKRSKKPTVGYVNPFVYTNLKKNKKANKEFKAEGIGNKWNCIICNQTSQNKEALISHYEQHKNECENSKDLKSENVCDYFRCVICSREYTSANAYKKHLKLKHGDNFYTCDSCSKSYKNALYLCFHNFSCHSNDGHYVCIVCNFKTDSKDVIKSHIQDHESNSNFQCDVCDRKFLTSAWFEEHKNTHVGAMPYQCEICLQNFPNSRYLTLHRKSLHLNATYTNMLTNKCDLCEKQFAHKKSLILHLRSHTGENTVLCDMCGKSLSSTEHLRQHLRIHTGYKPHICSVCGKGFAKKSNLTLHERVHSGEKPYVCGTCCKCFSQRSTDYSDDGDNNIYNGNSSYKPNGAKRKCIGDMFVPNSENLKYSEVVTPRSSESSGTPLSPKLSDGPPSKLYNGFDSIASNLEHFQQIITAMENMNAVQSHMCEKIDQMHRVIMITSDTNSVAPTNLPVTPLDTAEDFLEMETFLENPDNFHYFINRLSVVGGRGVSNSTMNVMKYLLTDKLASHYNWAGRQRKGGKKKLPFQKTKTMEAVYASIKLAYAKILPSDLKDKCIGNYVKEWLKLAPQRFDNKNKKNSNCQSEKKCIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -