Lyun016630.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000033.1:2102684-2103478[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-06 0.00061 20.7 0.0 1 43 14 55 14 56 0.92 2 2 9.9 3.1e+03 -0.8 0.0 17 23 133 139 125 141 0.84
Sequence Information
- Coding Sequence
- ATGCCAAACTACAAATCGATGGGGCTGCGAGGGACCTGGTCGGAGGAAAGTCTTCTTACTGCTGCACAAGCGGTTGCCGATGGATCATCCTTTAGAGGAGCAGCAAAAGCTAATGGAATACCTGAAAAAACTCTGCGCCACcgtttaaaatcaaacaattttgttAAGGGAAAACTAGGACAACCACCAGTCCTTGGCTGGAATGCAGAGAAAAAAATCGTTGTACACGTGACGAGACTGCAAAAGGCTGGATACGCCCCGACAAAAACTGCTTTGCGCAAGATGGCTTATAATTTGGCAGAAAGAATGGGCATACTCTCGTCCACACAGTTCTGTGAAACAAACCGCACTGCAGGGAAGGGGTGGCTTCAAGCTTTTCTTAATCGGAACCCTACCCTGTCGATAAGAAAAGCGCAAGGGGTGTCTAAGGCCCGAGCAGACGGAATGAACAAACAAGAGGTCGCCGATTATTTTGTCCTTTTAGAAAGTACTCTCGCAAAATACAGCTTATTTGATAAACCTGCTAATATATATAATGTAGACGAATCGGGTCTCCAACTGAACAACCCACCACAACACGTTATAGCTGCGAAAGGAAGCAAATCTGTTCAAGCTCTACAAACAGCAGAGCAAGGGGAAACCATAACAGTCGTTGCTTGTTGCAATGCCGAAGGGACTTTTCTACCTCCCTACATTATATTCAAGGGCGTGAACAAGCAGCAAGTGTGGCTAGATTACCGAAACGCAGCTATTGAGTGGGGGAGTTGCAAATCCTGGGAAGAAATTAGAGCGTAG
- Protein Sequence
- MPNYKSMGLRGTWSEESLLTAAQAVADGSSFRGAAKANGIPEKTLRHRLKSNNFVKGKLGQPPVLGWNAEKKIVVHVTRLQKAGYAPTKTALRKMAYNLAERMGILSSTQFCETNRTAGKGWLQAFLNRNPTLSIRKAQGVSKARADGMNKQEVADYFVLLESTLAKYSLFDKPANIYNVDESGLQLNNPPQHVIAAKGSKSVQALQTAEQGETITVVACCNAEGTFLPPYIIFKGVNKQQVWLDYRNAAIEWGSCKSWEEIRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -