Basic Information

Insect: Lycocerus yunnanus
Gene Symbol: -
Assembly: GCA_036346125.1
Location: JARFIX010000052.1:4013484-4023299[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.4e-08 1.4e-05 25.9 0.0 11 45 12 46 11 46 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.4e-08	1.4e-05	25.9	0.0	11	45	12	46	11	46	0.90

Sequence Information

Coding Sequence: ATGGACCGAAGAGCATATGGTAGCAGCTTTGAGAAGTGTAGAGGCGGAAAACTCTCTCAGCGAGAAGCGACAGTAAAATATAACATACCAAGGCGAACATTGCGTGATCACTTGAAAATTGGGTTTGAGAAAAAACGATTTGGACGTAAAACTACGCTGACACCGGAATTAGAAAATGATTTAGTATCTCGAATCATGCGTTATGCCAATATAGGCTTACCTTTGACTCCTAATCTTCTACGCTATCAAGCATACAAGTTCTGTCACACAAATGGTATCCCGCATCAGTTTAATGCACAAACCAAAATGGCTGGTCGAAAgtggttaaaattatttttaagaaggaATCCCGAAATATCAATGCGAAAAGCTCAAATGATAAATCCAGCAAGAGCTCAGAAACTAAACAAACCTGAAAAGATTTACAACATGGATGAAAAAGGCTGCCGAATCACTTTGCATCATCAACAGGCTGTATTGGCTGCCAGAGGTTCAAGACGTGTTCATATGGTCGCAAATGAGCACGCAGAAAATGTCACAATTGTTGGATGTGTCAATGCGGTAGGTTATGCAGTACCTCCTATGATTATTTTCAAGGGCAAACGAATGAAGCCAGAATTTACTGATAATTTACCACCAGGTTCTATTGTCAGAATGTCCGAGAAAGGATATATGAATTGCAACTTATTCAACGAATTTATCGATCACCTTGGCAAATATAAATCAACTGGTCCATGTCTTCTAATCTTTGATGGAGCTGCTTGCCACCTTGACTATTCCATAGTAGAATCTGCCGAAAAATATGACATTGCACTATACTGTTTACCATCAAATACGACCCACGAACTCCAGCCACTTGACAAATCGGTATACAGATCTTTCGAGCATCACTGGGATCAAGAGTTACTGAAATACATAGACCAAAACCCTGAAAGAAAATTGAACAAATCcagctttaatataattttgaccaaGGTTTGGCCAAAATGCATGACTCAAGATAATATATGTAACGGTTTCAGAGCCTGCGGAATATATCCCTTTGATCCAGATGCACTTCCAGAGACAGCATATGCACCTGCAGCACTTACAGAAGTGATCGAGCCCGAAGCAGTGACACcacaattaaaagttaataccGAAGTTATCAATCTAGAAAACCATTCCGATTCAGACGATAATCTACCCTTgtcgattttaaaaaatcgtatTAACAATGTTACTTCTAGTAAAGCAACAACGAATACCGCAGAAGTTATTGCGACTCATCGAAGAAAAGCAATCAATTATAAAGCACAGCTGGTAACAAGAGATTTGTTTTCACAAAAGAATAGTAGTAAAGGCACCAAAGAGAAAAATAGTTCGacaaaaaaagaagataaaGGTAACTCGAAAGAAGATTGGTATTGTCCAGCATGTGATCAAAGTAGAGTCGAAGACATGTGTCAGTGCCAGCAATGTAGTGTCTGGTATCACGAATTGTGTGTTGGTCTGGATGAGAAAAACATGTATTTTGATTGTCCTGGAGGCTATATTGAAGAAAAAGTCTTATTACGAAAGAGCCTATCAGTTTTGAACATATTCGACTTGGATCCTCTCAGACAAAATAAAATGTCGGCGATCAGAGCACTAATCTCGGCATCGGGTTTCGTTTTTCTATTAACTGAATGCTTAATGAAAATGATTGGCGATGTTAGTCGTCTGCATTTGTTAACATTGGTGGACGACATGATTACTTTTACTGCATTCTATCAGgcGCTTGCAAAAGTTATTACTGCAATTGTTTACCGCAACGAATTAAAAGAGGTTTTGTCGGCTATTCTACAAAACTATTGGAAAACGAACGTTTATGGTCAGAAACTCACTCTCGAGCTGAGGAGTATTTATCGTTCGGTAAAAAACGTTATGATCTTAGCAATCgggttatatttttttacagattttgCGTTTTGTGCACGACCGTTAATGCTATCAAAACGGCAACTACCAATCCAAACCTACCACGGTTCCGATGAATACGGTTCCATTCTACATTACGCAATCGCTTACACGTTACAAATTTTAGCTGTTACAATGTTAGGGGTTCCAGTTTATCTGTTCTTTGATTCCATTTTTGCTCTAATAATAATCCACATAATTATTGAtctaaaacttattaaaaaaggATTGTCAAAATTTGCAGTAGACGAAACGAACAAATGCGATTCCATGGAGATAAAGCTTTTGGTCGAACATTACGACCTGGTTTTAAGGTGTGCCAGCcaaaccaagaaaattttttcgcTCGTCTTACTAAATCAGTTTTTCACAACGGAATTGATGATTGGCATTTGTATGTTGAACATAATAACCACTGGATTTCCTCCGAACTTGGAACAAACGGTGAAAACCGCCCCGCTCATTTGTACATATTTGGGATCGCTGTTTATTTATTGCATCTTGGGGACATTTTTAATTGATGAGAACGAAAGTTTTGCAGAAGCTGCATATGACTGCGCTTGGTGGAAGAAGAATCAAATTAAGCTAaggaaaagtttaattttggtgaTACAACGATCTCAAAAAGTTGTGAACATGACCGCTGGAGGAATTTTCGTCTTAGATTTGAAAAACTTCTCTAAGGTAAAGTTTAAAGATTGGTCAGTCACAACGTCATGCCACTCAGCGCTCACTATACGTGGTATTCGTTTTCCTTGA
Protein Sequence: MDRRAYGSSFEKCRGGKLSQREATVKYNIPRRTLRDHLKIGFEKKRFGRKTTLTPELENDLVSRIMRYANIGLPLTPNLLRYQAYKFCHTNGIPHQFNAQTKMAGRKWLKLFLRRNPEISMRKAQMINPARAQKLNKPEKIYNMDEKGCRITLHHQQAVLAARGSRRVHMVANEHAENVTIVGCVNAVGYAVPPMIIFKGKRMKPEFTDNLPPGSIVRMSEKGYMNCNLFNEFIDHLGKYKSTGPCLLIFDGAACHLDYSIVESAEKYDIALYCLPSNTTHELQPLDKSVYRSFEHHWDQELLKYIDQNPERKLNKSSFNIILTKVWPKCMTQDNICNGFRACGIYPFDPDALPETAYAPAALTEVIEPEAVTPQLKVNTEVINLENHSDSDDNLPLSILKNRINNVTSSKATTNTAEVIATHRRKAINYKAQLVTRDLFSQKNSSKGTKEKNSSTKKEDKGNSKEDWYCPACDQSRVEDMCQCQQCSVWYHELCVGLDEKNMYFDCPGGYIEEKVLLRKSLSVLNIFDLDPLRQNKMSAIRALISASGFVFLLTECLMKMIGDVSRLHLLTLVDDMITFTAFYQALAKVITAIVYRNELKEVLSAILQNYWKTNVYGQKLTLELRSIYRSVKNVMILAIGLYFFTDFAFCARPLMLSKRQLPIQTYHGSDEYGSILHYAIAYTLQILAVTMLGVPVYLFFDSIFALIIIHIIIDLKLIKKGLSKFAVDETNKCDSMEIKLLVEHYDLVLRCASQTKKIFSLVLLNQFFTTELMIGICMLNIITTGFPPNLEQTVKTAPLICTYLGSLFIYCILGTFLIDENESFAEAAYDCAWWKKNQIKLRKSLILVIQRSQKVVNMTAGGIFVLDLKNFSKVKFKDWSVTTSCHSALTIRGIRFP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -