Lyun004931.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- Tigd2
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000008.1:13590857-13592281[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.1 2.5e+03 -0.5 0.0 14 24 13 23 8 26 0.81 2 2 2.4e-09 7.4e-07 30.0 0.0 3 40 80 117 78 120 0.88
Sequence Information
- Coding Sequence
- ATGGTTTTGCAAAGAAGATGTGAAGGTGTAGCAATTTCTGGGCCCATGTGTGTTCGTCAAGCACagaattttcattcaaaacttcaaatcgaAGGCGAATTTAGTGCATCTAGTGGTTGGCTTTACAGATTCAAAAAACGTCACGGAATTCGAGCATTAACAATTCAGGGCGAAAAATTGAGTGCAGATGAAGTAGCAATGGCGGAACCATCTAAAAGACGAAAAACttggaataaagaacaaatGCTGCTGGCAATTAAAACAGTTAGACAACATGATATGGGCTATAAAACAGCATCAAAGCATTTTGGTGTACCAAAGGGCACCCTCGAACGCTATGTGAAACAAACTAACCTAACTCCAGAGGAAGCGGTAAATAGAAGATCTGGTAAAAAACCTACATTAAATAAGGAAATAGAGGCAGAATTAGTTCAGTATTGTCTTAAGATGGATGAGAGATTTTTTGGTTTGCGAAGGTCAGATGTGAAACGTATGGCTTTCGAATTAGCAATAGCTAATAACATTCGACAtccattttcaaataaaaatggtACAGCAGGAAAAAAATGGCTCAGAGGCTTTCTGAAACGCCACCCTGAGTTGTCAATTAGATCACCTCAAGGTATGTCCAATGCCCGAATACGAGGTTTCAACAAAGAGAATGTTGCTACGTTTTTTGAGCTTTACGAAAAGGagttagataaaattaattttgaaccaCACTTGCTGTACAACGTGGATGAAACGGGAATTAGTGTGGTGCAACATaaaaggaataaaattatttctgccAGGGAAAGACCCCGGGTCTCTTATTAG
- Protein Sequence
- MVLQRRCEGVAISGPMCVRQAQNFHSKLQIEGEFSASSGWLYRFKKRHGIRALTIQGEKLSADEVAMAEPSKRRKTWNKEQMLLAIKTVRQHDMGYKTASKHFGVPKGTLERYVKQTNLTPEEAVNRRSGKKPTLNKEIEAELVQYCLKMDERFFGLRRSDVKRMAFELAIANNIRHPFSNKNGTAGKKWLRGFLKRHPELSIRSPQGMSNARIRGFNKENVATFFELYEKELDKINFEPHLLYNVDETGISVVQHKRNKIISARERPRVSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -