Lyun009302.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- cheC
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000015.1:6218923-6219990[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-10 1.2e-07 32.5 0.0 10 39 57 86 48 91 0.73
Sequence Information
- Coding Sequence
- ATGCGAGCGGACAGTCAGCCCGCGTCCTGCGACTGTGAAGTGCGTTTCCTTGTTTGCGGCCGCGCTGATCTAATATTTCGTGTAGTGGTTTTTGTAGaTATGCCTAGAAAACGTCAAAGAACCACCGCTAAAGCGGCTTGGACCGAAGAACATCTTTTTGCTGCTAAAACTGCCATTGAAGGAGGTATTTCCATAAGAAAGGCCGCGAAACAATATAACATACCATTTTCTACTTTGAAAGATAGATTAAAAAATGACAACATGAACAGCCCAAGACTAGGTCGCAAGCCTGTTTTTACCTCGCAGCAAGAAACTgaaattgctgaacaaatcaagTTGCTGGGTTCGCTGTACTATGGACTTAGCATCGCAGATTTACGTAAACTAGTTTATAAATATGCTGAACTCAAcaatatcaaaaacaattttgatcaAAACAGCAAAACGGCTGGATTGGATTGGGTGCACGCCTTTATGAAACGCAATCCTTCAGTTTCTATACGCAAAGCTGAAGCGACAAGCTTAAATAGAATTTCTGCTTTcaataaagaagaaattacacatttttatgATAAACTTGGCGACTTAATGGAAAAACATAAGTTTATTCCCAACAATATTTACAACGCCGATGAAACTGGTATCACCACGGTGACAGATCCAGGGAAAGTGCTCGCTGAAAAAAGGACAAAGAAGAGTTGGTTCTGTAACAAGCGGCGAACGAGGAAGCAACGTTACAGTCATGTGTGCGATGAGTGTAGCTGGAAACTTCATACCGCCCATGTTTATTTTTGCCAGGCAGAGAATGACGCCTTTATTAGAAAAAGATGGCCCAGCTGGAGCATTATACACAAACTCTAA
- Protein Sequence
- MRADSQPASCDCEVRFLVCGRADLIFRVVVFVDMPRKRQRTTAKAAWTEEHLFAAKTAIEGGISIRKAAKQYNIPFSTLKDRLKNDNMNSPRLGRKPVFTSQQETEIAEQIKLLGSLYYGLSIADLRKLVYKYAELNNIKNNFDQNSKTAGLDWVHAFMKRNPSVSIRKAEATSLNRISAFNKEEITHFYDKLGDLMEKHKFIPNNIYNADETGITTVTDPGKVLAEKRTKKSWFCNKRRTRKQRYSHVCDECSWKLHTAHVYFCQAENDAFIRKRWPSWSIIHKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00443904;
- 90% Identity
- -
- 80% Identity
- -