Lyun006405.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000011.1:278100-279170[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-10 9.7e-08 32.8 0.0 10 39 36 65 27 70 0.73
Sequence Information
- Coding Sequence
- ATGCGAGCGGACAGTCAGCCCGCGTCCTGCGACTaTATGCCTAGAAAACGTCAAAGAACCACCGCTAAAGCGGCTTGGACCGAAGAACATCTTTTTGCTGCTAAAACTGCCATTGAAGGAGGTATTTCCATAAGAAAGGCCGCGAAACAATATAACATACCATTTTCTACTTTGAAAGATAGATTAAAAAATGACAACATGAACAGCCCAAGACTAGGTCGCAAGCCTGTTTTTACCTCGCAGCAAGAAACTgaaattgctgaacaaatcaagTTGCTGGGTTCGCTGTACTATGGACTTAGCATCGCAGATTTACGTAAACTAGTTTATAAATATGCTGAACTCAAcaatatcaaaaacaattttgatcaAAACAGCAAAACGGCTGGATTGGATTGGGTGCACGCCTTTATGAAACGCAATCCTTCAGTTTCTATACGCAAAGCTGAAGCGACAAGCTTAAATAGAATTTCTGCTTTcaataaagaagaaattacacatttttatgATAAACTTGGCGACTTAATGGAAAACATAAATCCAGGGAAAGTGCTCGCTGAAAAAGGACAAAGAAGAGTTGGTTCTGTAACAAGCGGCGAACGAGGAAGCAACGTTACAGTCATGTGTGCGATGAGTGTAGCTGGAAACTTCATACCGCCCATGTTTATTTTTGCCAGGCAGAGAATGACGCCTTTATTAGAAAAAGATGGCCCAGCTGGAGCATTATACACAAACTCTAAAATGGCTGGATAA
- Protein Sequence
- MRADSQPASCDYMPRKRQRTTAKAAWTEEHLFAAKTAIEGGISIRKAAKQYNIPFSTLKDRLKNDNMNSPRLGRKPVFTSQQETEIAEQIKLLGSLYYGLSIADLRKLVYKYAELNNIKNNFDQNSKTAGLDWVHAFMKRNPSVSIRKAEATSLNRISAFNKEEITHFYDKLGDLMENINPGKVLAEKGQRRVGSVTSGERGSNVTVMCAMSVAGNFIPPMFIFARQRMTPLLEKDGPAGALYTNSKMAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01516506;
- 90% Identity
- iTF_00927491;
- 80% Identity
- iTF_00927491;