Lyun004042.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000008.1:3243160-3243615[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-10 4.4e-08 33.9 0.0 4 41 21 58 18 62 0.86
Sequence Information
- Coding Sequence
- ATGCCTACGgaatataaaagaaaacctACTGGTTCAAGCCGCGGTTTATGGACCAAACAACAACTTGTGGCTGCTGTTAATGctgtaaaaaatgataatatggGAGTCAATGCTGCCTCGAGACAATTTAACATTCCAGCTCCGACATTAAGACGAaggatgaaaaataataatctctCAAAACAATCTTTAGGGCCACCTTCAGTACTTGGTGAACAAAatgaggaaaaaattaaattgcatattaaaaAGCTTCAAAAGCACGGATTTGCTCCAACTCGTAATTGTGTAAGGGCTATGGCATTCAAATTAGCAGAACAACTGGAAATAAAACATACATTCAACAAAGATAAGGGGTTAGCCGGTTATGATTGGTTAAAATGTTTCTCAAGCGACATGAAGATCTTAGCGTACGAAAATCGGAGGGTGTTTCATTGGCTCGATGTCAAGGAATGA
- Protein Sequence
- MPTEYKRKPTGSSRGLWTKQQLVAAVNAVKNDNMGVNAASRQFNIPAPTLRRRMKNNNLSKQSLGPPSVLGEQNEEKIKLHIKKLQKHGFAPTRNCVRAMAFKLAEQLEIKHTFNKDKGLAGYDWLKCFSSDMKILAYENRRVFHWLDVKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00927477; iTF_00927478; iTF_00927479; iTF_00927480;
- 90% Identity
- iTF_00927477;
- 80% Identity
- -