Lyun033117.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000175.1:61580-63235[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.5e-09 2.9e-06 28.1 0.0 4 34 21 50 18 57 0.91 2 2 0.15 46 5.1 0.0 27 41 157 172 154 175 0.90
Sequence Information
- Coding Sequence
- ATGCCGTTCCAATACAAACCAAAGGAAGGTGCTACAAGAAGAAATCATTTTACTAAGCAACAAATTTCTAATGCTATAGAAGATGTTGAAAAAGGAATGTCATTAAGGAAAACTGCTATGAAGTATGATATTAATAGAACTACACTAGGCCGAGAAGAAAATTCGAGACCCCAAGAACCTATTTTGCAACTAGAAacagaacaaataattttaccaattcCGTCCCCTTCAAGTAACACAACGATTCTAACTTCTACACCGGTTCTTATTTTACCCATTTCTACAAAGGAGCTTCCATCAACATCGCGCGAATTACCAATCCCATCAACACCACCCAGTTCAAAGTCAGCCATCAAAGTCACACCTAATATGATTAAGCCGTTTCCTAAAGCATTACCACGGAAAACAACCCGACGTGGTAGACAGCCTGGGAagactaaaattttaacgaaaacacCGGAAAAACTAGATGTGCCACAAGAAACTTTAAACCAGGCGAGAAAAAGGAGAAatattaagataaataaaaaagcagAAGCCGAAAGTACGAAAGCAAGTTCTACAGTCCAGCGATAG
- Protein Sequence
- MPFQYKPKEGATRRNHFTKQQISNAIEDVEKGMSLRKTAMKYDINRTTLGREENSRPQEPILQLETEQIILPIPSPSSNTTILTSTPVLILPISTKELPSTSRELPIPSTPPSSKSAIKVTPNMIKPFPKALPRKTTRRGRQPGKTKILTKTPEKLDVPQETLNQARKRRNIKINKKAEAESTKASSTVQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -