Lyun017908.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000037.1:6296509-6298160[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.8e-11 3.1e-08 34.4 0.0 5 45 1 41 1 41 0.93
Sequence Information
- Coding Sequence
- ATGGTAGCAGCTTTGAGAAGTGTAGAGAGCGGAAAACTCTCTCAGCGAGAAGCGACAGTAAAATATAACATACCAAGGCGAACATTGCGTGATCACTTGAAAATTGGGTTTGAGAAAAAACGATTTGGACGTAAAACTACGCTGACACCGGAATTAGAAAATGATTTAGTATCTCGAATCATGCGTTATGCCAATATAGGCTTACCTTTGACTCCTAATCTTCTACGCTATCAAGCATACAAGTTCTGTCACACAAATGGTATCCCGCATCAGTTTAATGCACAAACCAAAATGGCTGGTCGAAAgtggttaaaattatttttaagaaggaATCCCGAAATATCAATGCGAAAAGCTCAGATGATAAATCCAGCAAGAGCTCAGAAACTAAACAAGTCGATTGTCAAAGATCATTTtgataaattgacaaatttgttcGACAAACTTGACTTGAAAAATAGACCTGAAAAGATTTACAACATGGATGAAAAAGGCTGCCGAATCACTTTGCATCATCAACAGGCTGTATTGGCTGCCAGAGGTTCAAGACGTGTTCATATGGTCGCAAATGAGCACGCAGAAAATGTCACAATTGTTGGATGTGTCAATGCGGTAGGTTATGCAGTACCTCCTATGATTATTTTCAAGGGCAAACGAATGAAGCCAGACTTTACTGATAATTTACCACCAGGTTCTATTGTCAGAATGTCCGAGAAAGGATATATGAATTGCAACTTATTCAACGAATTTATCGATCACCTTGGCAAATATAAATCAACTGGTCCATGTCTTCTAATCTTTGATGGAGCTGCTTGCCACCTTGACTATTCCATAGTAGAATCTGCCGAAAAATATGACATTGCACTATACTGTTTACCATCAAATACGACCCACGAACTCCAGCCACTTGACAAATCGGTATACAGATCTTTCGAGCATCACTGGGATCAAGAGTTACTGAAATACATAGACCAAAACCCTGAAAGAAAATTGAACAAATCcagctttaatataattttgaccaaGGTTTGGCCAAAATGCATGACTCAAGATAATATATGTAACGGTTTCAGAGCCTGCGGAATATATCCCTTTGATCCAGATGCACTTCCAGAGACAGCATATGCACCTGCAGCACTTACAGAAGTGATCGAGCCCGAAGCAGTGACACcacaattaaaagttaataccGAAGTTATCAATCTAGAAAACCATTCCGATTCAGACGATAATCTACCCTTGTCGGTTTTAAAAATCGTATTAACAATGTTACTTCTAGTAAAGCAACAACGAATACCGCAGAAGTTATTGCGAGTACATCAACCAAGTCaccattccaaaaattttaccgACACCACAATTCAAAAAAGAGAACAGCTCATCGAAGAAAAGCAATCAATTATAAAGCACAGCTGTTCGacaaaaaaagaagataaaGGTAACTCGAAAGAAGATTGGTATTGTCCAGCATGTGATCAAAGTAGAGTCGAAGACATGTGTCAGTGCCAGCAATGTAGTGTCTGGTATCACGAATTGTGTGTTGGTCTGGATGAGAAAAACATGTATTTTGATTGTCCTGGAGGCTGTAATTGA
- Protein Sequence
- MVAALRSVESGKLSQREATVKYNIPRRTLRDHLKIGFEKKRFGRKTTLTPELENDLVSRIMRYANIGLPLTPNLLRYQAYKFCHTNGIPHQFNAQTKMAGRKWLKLFLRRNPEISMRKAQMINPARAQKLNKSIVKDHFDKLTNLFDKLDLKNRPEKIYNMDEKGCRITLHHQQAVLAARGSRRVHMVANEHAENVTIVGCVNAVGYAVPPMIIFKGKRMKPDFTDNLPPGSIVRMSEKGYMNCNLFNEFIDHLGKYKSTGPCLLIFDGAACHLDYSIVESAEKYDIALYCLPSNTTHELQPLDKSVYRSFEHHWDQELLKYIDQNPERKLNKSSFNIILTKVWPKCMTQDNICNGFRACGIYPFDPDALPETAYAPAALTEVIEPEAVTPQLKVNTEVINLENHSDSDDNLPLSVLKIVLTMLLLVKQQRIPQKLLRVHQPSHHSKNFTDTTIQKREQLIEEKQSIIKHSCSTKKEDKGNSKEDWYCPACDQSRVEDMCQCQQCSVWYHELCVGLDEKNMYFDCPGGCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00927456; iTF_00927458; iTF_00927459; iTF_00927457; iTF_00927460; iTF_00927464; iTF_00927461; iTF_00927463;
- 90% Identity
- iTF_00927456;
- 80% Identity
- -