Lyun010961.2
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000018.1:7266924-7268529[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-10 9.2e-08 32.9 0.0 4 44 21 60 18 61 0.92
Sequence Information
- Coding Sequence
- ATGCCGTTCCAATACAAACCAAAGGAAGGTGCTACAAGAAGAAATCATTTTACTAAGCAACAAATTTCTAATGCTATAGAAGATGTTGAAAAAGGAATGTCATTAAGGAAAACTGCTATGAAGTATGATATTAATAGAACTACACTAGGCCGGTACGTGAAAGATAAagagaagttaaaaaaatttgatgaaacgGGAAGCCAGTACAAGTCCCCTCAGATATTTTCACTTGAGGAAGAGAAAATATTGGTTGACTATTTACTAGAATGCAGCAAAATGCATTATGGTTTAACCAAAGTAGCAGCTATGAAGATAGCAAaaagttggaacaaaaataaatctactGGAAAGGATTGGTTTCGAGGATTTCTTAAAAGAAATACACAACTAAGCTTAAGAACACCAGAAGCTACAAGCCTTTCTAGGGccacaagttttaataaaaagaatgtaAAAGATTTCTTCGACAATTTAAGAgaggtaaaagaaaaattttgctttgaaccACAGAATATATATAACTGTGATGAAACTGGATGTACTACAGTACAGAAGTGCCCCAAAGTGGTAGCTGGTAAACATTTTCGTCAAGTTGGTCAAGTAACGTCAGCTGAAAGAGGAACTCTTGTGACGGTCTGTTTTGCTGTGAACGCCATAGGGAATGTTTTACCACCATTTTTTATCTTCCCACGcgtaaaatataatagtttatttgttgaaaatggtCCATTAGGATCAGATGGTGACTCGTATCCAAGTGGCTGGATGACGGCGAATAGTTTTGTCAAGTTTATGattcatttcataaaattttctcatgcaTCAAAAGAAAATCCAGTTCTTTTAATACTTGACAATCATGAAAGTCACGTGAGTGTGGATGTAATTCGAATAGCCAAAGAAAATGGAATTACTCTACTTACTCTCCCACCCCATTGCAGCAATAAGCTTCAGCCACTGGACATCACAGTATATGCTTCATTCAAATCAAGATATAATTCTGCTCTTAATAATTGGATGTTGTCCAATCCTGGCAAGACTGTAACTATTTACAATATACCAGATATTGTATCACAAATCATGTCATCGTCCTTTAGCCAGGCTAACATAATCAGTGGCTTTAAGAATTCTGGAATACATCCCTTTAATTCGGATATATTTCAAGATGAAGATTTTTTGTGCTCAGCTGTTACTGACAGAGAAGAAAATTCGAGACCCCAAGAACCTATTTTGCAACTAGAAacagaacaaataattttaccaattcCGTCCCCTTCAAGTAACACAACGATTCTAACTTCTACACCGGTTCTTATTTTACCCATTTCTACAAAGGAGCTTCCATCAACATCGCGCGAATTACCAATCCCATCAACACCACCCAGTTCAAAGTCAGCCATCAAAGTCACACCTAATATGATTAAGCCGTTTCCTAAAGCATTACCACGGAAAACAACCCGACGTGGTAGACAGCCTGGGAagactaaaattttaacgaaaacacCGGAAAAACTAGATGTGCCACAAGAAACTTTAAACCAGGCGAGAAAAGGAGAAatattaagataa
- Protein Sequence
- MPFQYKPKEGATRRNHFTKQQISNAIEDVEKGMSLRKTAMKYDINRTTLGRYVKDKEKLKKFDETGSQYKSPQIFSLEEEKILVDYLLECSKMHYGLTKVAAMKIAKSWNKNKSTGKDWFRGFLKRNTQLSLRTPEATSLSRATSFNKKNVKDFFDNLREVKEKFCFEPQNIYNCDETGCTTVQKCPKVVAGKHFRQVGQVTSAERGTLVTVCFAVNAIGNVLPPFFIFPRVKYNSLFVENGPLGSDGDSYPSGWMTANSFVKFMIHFIKFSHASKENPVLLILDNHESHVSVDVIRIAKENGITLLTLPPHCSNKLQPLDITVYASFKSRYNSALNNWMLSNPGKTVTIYNIPDIVSQIMSSSFSQANIISGFKNSGIHPFNSDIFQDEDFLCSAVTDREENSRPQEPILQLETEQIILPIPSPSSNTTILTSTPVLILPISTKELPSTSRELPIPSTPPSSKSAIKVTPNMIKPFPKALPRKTTRRGRQPGKTKILTKTPEKLDVPQETLNQARKGEILR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00927523; iTF_00927485; iTF_00927469; iTF_00927486; iTF_00927487;
- 90% Identity
- iTF_00927523;
- 80% Identity
- -