Lyun011895.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000020.1:2171521-2177946[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-06 0.0016 19.4 0.0 2 35 11 44 10 51 0.89 2 2 5.5e-06 0.0017 19.2 0.0 2 35 442 475 441 482 0.89
Sequence Information
- Coding Sequence
- ATGTCGacgaaaaaaaattgcaaatatagcAGAGATGATTTAAGACGTGCTTTGGATGCCATAAAAAATGGCACACCTTGTTTAGCTGCGGCGAAACAATACAACGTTCCGAGAACTACTCTTATTGGGAAGATGAAGGGCATTTATCCAGAAGAATGTCGTAGCGGAGCACCTTCAGTACTAACTGTAAATGAAGAAAATCTATTAGTTCAATGGATCATCAATATGGGGCGCATGGGTTTTCCTGTAAGTAAAGATCAATTTCTCGACAGTGTTTGCCttctggtaaaaaatttaaagcgtcCTCACAAGTTTACAGATGGAAGACCAGGTCGTCACTGGTatgaattatttactaaaagGCATCCTGAAATTAGTGAACGAATAGCACAAAACTTATGCGCATCTCGATCAGCCGTAACTGAAAGCAAAATCAGAAACTGGCATAAGGAAATTGAAGAATACTTTATTTCATCTAACATTAATATTACTGATCCAAAAAGAATATTCAACAcggatgaatctgcattttttcTATCGCCAAAAGGTCGTAAGATACTTGCTAAGAAAGGTAGTAAGTCACTTCATGACAGATCTGGTGACGATAAAGAATGCCTGACTGTTCTTGTTACTGGTAATGCTGCAGGTCAACTAGCTCCACCCATGGTGATGTACGCATATGAAAGAATACCAAAGCATGTAGTGTCACAGAAACTTCTTACTGAAGGTAATGAGCTAAACAAAACCAAAGAAGCGATAGATCCTGCACTAGTGAATCATTTGCGGTATTTTGAATCTCTTGTTCAGGcagattttttgaataaatgttaTGAACTGATGGGTGCAGACTGGACAGGTGAAATTAAAGATAAGAGTTTGTATAGAATTTGGTACAAAATGTACCAGAAATCGGGATTATCTCAGGACGAAGAAAATATTCCGAACATTATAATAGATATAGAAGAAGGCCTAATTCTAGAAGATGGATGGGAAAATTCAGTTGTACTTGAAGCTGATGATGCATTACCTGAAGACAATTTTGAAATCGAACCCGCAGTTCAAAATACTGAAACCGAAGTAGAACTTGTTGGTCCTAAGGAAAATCCTgatcaagaaaatataatagaaaaaaaagaaagcaTTGACGAAACTGAAGAAACAACAAAAACTAATGTGATAGAAAagaatatagaaaaaatattagaaaacatTCAATTAACCCCAGAAAAACAAATTGATGTAATTGAAGAGAAGCACCTAAGAGAGGAATCGGTGAATACAGCTGAAAATGTGGATACTTGCAATAATACTAAACATTCTCGcAGAGATGATTTAAGACGTGCTTTGGATGCCATAAAAAATGGCACACCTTGTTTAGCTGCGGCGAAACAATACAACGTTCCGAGAACTACTCTTATTGGGAAGATGAAGGGCATTTATCCAGAAGAATGTCGTAGCGGAGCACCTTCAGTACTAACTGTAAATGAAGAAAATCTATTAGTTCAATGGATCATCAATATGGGGCGCATGGGTTTTCCTATACTTGCTAAGAAAGGTAGTAAGTCACTTCATGACAGATCTGGTGACGATAAAGAATGCCTGACTGTTCTTGTTACTGGTAATGCTGCAGGTCAACTAGCTCCACCCATGGTGATGTACGCATATGAAAGAATACCAAAGCATGTAGTGTCACAGAAACTTCTTACTGAAGGTAATGAGCTAAACAAAACCAAAGAAGCGATAGATCCTGCACTAGTGAATCATTTGCGGTATTTTGAATCTCTTGTTCAGGcagattttttgaataaatgttaTGAACTGATGGGTGCAGACTGGACAGGTGAAATTAAAGATAAGAGTTTGTATAGAATTTGGTACAAAATGTACCAGAAATCGGGATTATCTCAGGACGAAGAAAATATTCCGAACATTATAATAGATATAGAAGAAGGCCTAATTCTAGAAGATGGATGGGAAAATTCAGTTGTACTTGAAGCTGATGATGCATTACCTGAAGACAATTTTGAAATCGAACCCGCAGTTCAAAATACTGAAACCGAAGTAGAACTTGTTGGTCCTAAGGAAAATCCTgatcaagaaaatataatagaaaaaaaagaaagcaTTGACGAAACTGAAGAAACAACAAAAACTAATGTGATAGAAaagaatatagaaaaaaatattagaaaacatTCAATTAACCCCAGAAAAACAAATTGA
- Protein Sequence
- MSTKKNCKYSRDDLRRALDAIKNGTPCLAAAKQYNVPRTTLIGKMKGIYPEECRSGAPSVLTVNEENLLVQWIINMGRMGFPVSKDQFLDSVCLLVKNLKRPHKFTDGRPGRHWYELFTKRHPEISERIAQNLCASRSAVTESKIRNWHKEIEEYFISSNINITDPKRIFNTDESAFFLSPKGRKILAKKGSKSLHDRSGDDKECLTVLVTGNAAGQLAPPMVMYAYERIPKHVVSQKLLTEGNELNKTKEAIDPALVNHLRYFESLVQADFLNKCYELMGADWTGEIKDKSLYRIWYKMYQKSGLSQDEENIPNIIIDIEEGLILEDGWENSVVLEADDALPEDNFEIEPAVQNTETEVELVGPKENPDQENIIEKKESIDETEETTKTNVIEKNIEKILENIQLTPEKQIDVIEEKHLREESVNTAENVDTCNNTKHSRRDDLRRALDAIKNGTPCLAAAKQYNVPRTTLIGKMKGIYPEECRSGAPSVLTVNEENLLVQWIINMGRMGFPILAKKGSKSLHDRSGDDKECLTVLVTGNAAGQLAPPMVMYAYERIPKHVVSQKLLTEGNELNKTKEAIDPALVNHLRYFESLVQADFLNKCYELMGADWTGEIKDKSLYRIWYKMYQKSGLSQDEENIPNIIIDIEEGLILEDGWENSVVLEADDALPEDNFEIEPAVQNTETEVELVGPKENPDQENIIEKKESIDETEETTKTNVIEKNIEKNIRKHSINPRKTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -