Lyun019237.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000042.1:964562-990673[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0043 1.3 10.0 0.0 3 38 360 394 358 395 0.94 2 2 5.6e-10 1.7e-07 32.0 0.0 1 35 456 491 456 496 0.92
Sequence Information
- Coding Sequence
- atgggaaACAAGCGTTTGAGTACCGTTAAAAGATGTAAAAGAGTTGCATGCAAGAAttgtagcGATGCATTTATCGGCGAAGCACTGACTGTTGAACAGGatatttcaaataatgaaaCAGAATGTGatattaatcaagaaaataCTCAAAAcatttttatacaaaataatgtaaattctaATATACCTGAAATAAATGCCAACCCAAATTTGGAACCAGAAATTGTTTTAAGatgtaGCGACATCTTTATCGACGAAGAACTGACTGTGGAACCGGAAATTTCGAATAATGaagcaaaatttgatatttgtgGAAGACGATTTGTCAATATTCCATACTTTTGGAAACAGTTGCAAGCTATCAGTATACATCCACCTTTTCAATGTTCGATAAATGATATGGACATAATTAAAGAAACTCGAAAAGGTTTAATTAGTGTTTTTAAACTATGttgtaaaatgtgtaaaatgGTGACAGATATTGAAACCGATACAATTGccgaagaaaataattttaatattaattctgcAACAGTTTTGGGAACCATTTCTACTGGTTGTGGATTTTCTCAACTAGAAGAATTCTGTTCTGCCGTCGATATACCTGCCATGTCATATAGAACATACAAATTGATGAAAGATGCAGCACAAGAAGAAGCTGAAATTGCTCGAAAGCTTGGCGATGTTGACCAAGACGGTTACCCGTTAGTAACGGTAGTAGCGGATGCAGCTTGGTGTACGAGGtcctacaaaaaattttcttctgctTCCGGTGTTGCTTGTATAATTGGTCAAGCTACTGGAAAGCTATTGTTTTGGGCATTCGAAACAAATATTGTGCAATGTGTGCAATGGCTGAAAGTAGAAACGCAGAGGCACAACAACATCGTTGTTTTAAGAATTGGACAGgcCAAGTTGTTGGAATCGTCTCACGCTTGGCTCGGCGCCTCCACGTCGTCAATAGCTGAGGTTTCGTCACAAGATTTTGGTTATAATAACTGTGAACAAAATAAGCAGTCAGATTTGCAAATAAGCGTGGATTACTTCTCTTCACGTAAATCACCTAGATGGAATTCTGAAGACCTTCAGAGAGCTATTGAACTAGTACGCTCTGGCGTACCTATTAAACCTTCCGCAGAGCAATGTAACATCCCTGTAATGACGCTTTGGCGACGAACTAGAGCTTTAGGTGTTATTAGCAGTCGGGCGATGACATATTCGCTAAGACCACAAAGCACTTCTAGTAAATTGCACAAAAATTACGAAACGTCGGAAAATTGTTTACAAGAAGACTGTAACGATCATACTTGGCAAAAAGATAGTGATGatTACCCCAGCTTACTAAAGCTTAAAACTCCAACTTGGACACAAGAGCAACTAAAAGAAGCCATCGACGCCGTAGTGAAACAGAAAATGCGTTTTACTCAAGCTTCGTCTCGTTATGGAATTCCCAAAGGAACGCTTTATGATAATATTCTCGGAAAATCTAAGCGCATGGCTGTACTTGAGGAAGCAGGTTTGACACTCAACGAAGAGGCGGCTGTGTTAGAATTTTGTTGTGATGTTTCCATTTCTCCCTACAACAGACGCACAAAAAAATCTCTTCATTCGATATTAAACTTTGTCGAAAAAATTAGACGCAATCGCGACCCCGAGTTTATGTTCACCGGTCTCTCGGGATTTAGATGGTGGTGGGCATTTTGCAAAAAACACAGTATCGTTTCGCTTTTCTACGATAATGGAACTAgcaattga
- Protein Sequence
- MGNKRLSTVKRCKRVACKNCSDAFIGEALTVEQDISNNETECDINQENTQNIFIQNNVNSNIPEINANPNLEPEIVLRCSDIFIDEELTVEPEISNNEAKFDICGRRFVNIPYFWKQLQAISIHPPFQCSINDMDIIKETRKGLISVFKLCCKMCKMVTDIETDTIAEENNFNINSATVLGTISTGCGFSQLEEFCSAVDIPAMSYRTYKLMKDAAQEEAEIARKLGDVDQDGYPLVTVVADAAWCTRSYKKFSSASGVACIIGQATGKLLFWAFETNIVQCVQWLKVETQRHNNIVVLRIGQAKLLESSHAWLGASTSSIAEVSSQDFGYNNCEQNKQSDLQISVDYFSSRKSPRWNSEDLQRAIELVRSGVPIKPSAEQCNIPVMTLWRRTRALGVISSRAMTYSLRPQSTSSKLHKNYETSENCLQEDCNDHTWQKDSDDYPSLLKLKTPTWTQEQLKEAIDAVVKQKMRFTQASSRYGIPKGTLYDNILGKSKRMAVLEEAGLTLNEEAAVLEFCCDVSISPYNRRTKKSLHSILNFVEKIRRNRDPEFMFTGLSGFRWWWAFCKKHSIVSLFYDNGTSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -