Lyun001898.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- bab2
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000003.1:676020-678591[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2 1.3e+03 0.4 0.0 14 23 273 282 266 285 0.84 2 2 1.8e-15 5.4e-13 49.6 0.0 2 42 364 405 363 408 0.94
Sequence Information
- Coding Sequence
- ATGACTATGCAACAATATTGTCTACGGTGGAATAATCATCagccaaattttatttcagtatttTCCAGTCTTTTAAATAATGAATCATTGGTTGATGTCACATTAGCTGCCGAAGGGAGACATTTACAAGCTCACAAAGTTGTTTTATCTGCTTGCAGTTCATATTTTCAGtcactgtttACTATAAATCCATGCCAGCATCCAATTGTTATCTTGaaagatgtaaaatttttagatttaaaagtTATGGTTGATTTTATGTATTATGGAGAAGTTAACGTATCTCAAGATCAATTGCCACATATTTTAAAGACTgctgaaatgttgaaaattaaaggTTTAGCCGAAATCCCTGTAGAACAGTCTGCTCTTACCAAATCTCAGAGCAGCTCAACCGAACGAGCAGAATTATTAACTCCCGGTGATTCCAATTGGAGCACAGAAGACGTACAAAGACAATCTTTATCATCGTCACCTTGTCCTTTATCACCTGCTAGTAAGCGCAAAAGACTAAGAAAAACCTCGACAGGCTCTGGTTCTGGATCTACAGAAAGAATGTCGGAGGAACATGTAACAACTGAAGTAACCACAATGTCATCCCCTATGGGGAATACTCTTGGAACTGTGATAAAACCTGACCCAGGTAGTTTTATTGCCGAAAGCAGTAACCCACTTCGTGTTAAGCAACATAGTAGTGATTCGGAACTACAAAGAGGTAGTTCACATGAAAGTATCGAAGGAGAATCTTCTCATCAAATTacattgcaAATTCCCCAACAAGAAATGTCGCACAAACTTGAATCAACAATTGACATCTCTGGAACCACATCGATTTCTCAAGCTCAGCCAGGATACCAATGGGGAATTATCGATGGATCATATTCACGTTTTCCTCTTCCAACATGTCAACCCAATATTGCTACACAACTTGACCTCAATTACACCACCACAACAATACCTCAATGCACAATGGACAATAACTTACCGTCGACTTCTGAAACATCCACAAGCACAGTCAATCACAACCACATAGCGGTATCTCCAACTCAATTGATTCAAAAGCGAAAAAGGAGTATTAACCCTCAATCTGATGAAAATTTTGTGCGTGCATTGGAAGCTGTACGGTTTGGTGGAATTGGATTTTGCAAGGCTGCTAAAATGTATGGCGTCAATAATCGTACTCTGTGGTTGGAATATAAAAAAAGAGGATACCCTAACAATAGGATAAGTATTAAAAATCGTAAGCAAGAGTATATTAACTCGGCCGGTGTCAATCAAAATCCTACAAGTCCTGTTGCTACTACTTCCAGTGATCAAGAAAACGATTTAATATGTGAAGCTGTTAATCATCCAACTACTGCTATTATTAGTGGAACATATTTAGACAGTCGTCATGTTGATTTATCTCCCATTTTACCAAGACCTCGATATTTAGATAATGTTAGTGTTAATGCTCAACACACGCTAGGTTTATCGGGAGTCACTTTTGAACAAATgtga
- Protein Sequence
- MTMQQYCLRWNNHQPNFISVFSSLLNNESLVDVTLAAEGRHLQAHKVVLSACSSYFQSLFTINPCQHPIVILKDVKFLDLKVMVDFMYYGEVNVSQDQLPHILKTAEMLKIKGLAEIPVEQSALTKSQSSSTERAELLTPGDSNWSTEDVQRQSLSSSPCPLSPASKRKRLRKTSTGSGSGSTERMSEEHVTTEVTTMSSPMGNTLGTVIKPDPGSFIAESSNPLRVKQHSSDSELQRGSSHESIEGESSHQITLQIPQQEMSHKLESTIDISGTTSISQAQPGYQWGIIDGSYSRFPLPTCQPNIATQLDLNYTTTTIPQCTMDNNLPSTSETSTSTVNHNHIAVSPTQLIQKRKRSINPQSDENFVRALEAVRFGGIGFCKAAKMYGVNNRTLWLEYKKRGYPNNRISIKNRKQEYINSAGVNQNPTSPVATTSSDQENDLICEAVNHPTTAIISGTYLDSRHVDLSPILPRPRYLDNVSVNAQHTLGLSGVTFEQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00268705;
- 90% Identity
- iTF_00268705;
- 80% Identity
- iTF_00927853;