Lhir025941.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387375.1:1924664-1949805[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.2 2.6e+02 3.0 1.5 1 19 274 292 274 294 0.95 2 11 0.00084 0.067 14.3 0.9 2 23 315 337 314 337 0.97 3 11 0.011 0.84 10.9 2.0 1 23 901 923 901 923 0.96 4 11 5.4 4.4e+02 2.3 0.2 3 23 930 950 928 950 0.87 5 11 1.9 1.5e+02 3.8 2.4 2 23 1041 1062 1040 1062 0.92 6 11 0.023 1.9 9.8 3.4 2 23 1080 1101 1079 1101 0.97 7 11 2e-06 0.00016 22.6 3.4 1 23 1107 1129 1107 1129 0.98 8 11 0.00032 0.026 15.6 0.3 3 23 1136 1156 1134 1156 0.96 9 11 0.00021 0.017 16.2 1.1 2 21 1163 1182 1162 1183 0.94 10 11 1.8 1.5e+02 3.8 0.7 2 19 1191 1208 1190 1209 0.87 11 11 0.018 1.5 10.1 0.8 3 23 1222 1243 1221 1243 0.94
Sequence Information
- Coding Sequence
- ATGTCTAACTATAAAAAGAAAAGTAGGAAGTCGAAACATGAAGTGCGGGATGTTGATGTTGAAGATACAGAAAATACGATTTTGCAGATCACATTTCCGGAGCCGCAACTAGAAACCGAAAATGTGGAACCTTCTCAGCAGGAGAATCTCCTGGATCCACCCCCAAATCTTGACCACACATACGCCCGGCCTAATCGCTCCTTCACATCATCATCGCTGACCACCCCATCATCGTCGGGCATTCATCTCTCCGTCAAAGTGGAGGTTGAAGAGTTCGACGAATCCATCTTCAATGAGATTCCTTCCTCAGTCTCTGAGCTCGTCTCCAAAAATGATAAACATAATCCTATACACGCTTTCGAGGTTAGTCTAGAGAAAATATTCAAAATATCTGATCATATCAGCTGTAGTACACCAAATCTAGCTGATAAGATCCTCAATATAGATATAAAAAATATATGGGGCCGTGCCTTGAAGCCGAACGATGAATATGAACCTTACGATGATTTGATACAGCAAGCGTTCAATAAATGGAACCACTCTCTAACCTCCGGACGCTTAATGCAGCATGGTGATACTCCGTTGTTCTACCAGTGTTATATATGTAAGCTTGCTTGGTGGTACTTCACGCCATTCAAAGAGCATATACGTACACATAACCTCAATACAATGAAGATACAATACCAAGAAGACGGTTTCGAATCCTACATATATGCTTGCGAAGGGGATATTAGAAATACAATGTACATACCTCTTGAGGGGAATTGTCCTCGCTGTGAAAAACCATACAGTTTTCATGTTAAACCAACTCACGGGATTTACTCTTGCAAAGAATGCTTTTTAGGATTAGAGACATGCAAATTATTAAAACAACATGAATCAGAATGTTTGGTGACATACTTTGTCACCAAATGTGAAAATGAAATGTACAATGTGAATGTGAAATGTACAATTTGCACGTTAAAATTTCACACAGATAGTGAACTCGAGTCCCACATGATCACCGTACACGATGTACGGTCCGACATCATCTCACCTTACGTTTTTAAGATGTGTGGCGTATGTAAGAAGAAATACCATTATTTTTTTACACATATGTGTGTGAGAAGTACTCTTAGCTCTCCGTGTGAATTTTGCTTTCGCAGATTCCATACAAAAACCCTGCATAAGGCGCATAATTTCATCCAAGAGAAAGATTATCCTTGTAGGATATGTGGTGCAGTATTACAATCACGGTGTATGGAAACTGAACATATGCTGGGACACACGGATAATTATCGTATTGTATACAGGTGTATAAACCATACTTGTCCGCCTACGATACTCTTCCTCGATATGGAGTCTGTCAAACGTCATTGGAGACTCTACCATAAAAAGAAGACGGATTGCAGGAGGCCGTGTTATGATAAGGCTCCTTCTTGCGGCGGCGTCGTGTGGCGGGTCGCCCTCTTCCCTAACATATGGTTGAGGAGGGCGATGGCTGGCACATGCGTCATACTCGTGATCGGGTGCTGCTTGCGGGTCGCTGGTTTGCTCGTGATTGTGATACCAAAACAGTGTGTCATCTCTGACTGCGTACAAATATTAGACAGGACAGGCTGCATTGATGGAATCAGGATAGAGAAGGTCGTGAGCGAAGAGCCAGAAGTAGAGGACTGGTGCGTGGACAACGCGCCGCTCGAGCCGATGGACACGCAGCCAGAGATAGACGACGACGTCATTATGATCAAACCGGAGCCGCAGGAGCCTATCGTGATCGACAGTCAGGATGACAGCATGGACAGTCAGATGGATTACGCAGAAATGCTATCGAAAGTGTTCAAAGTGTCTGACGCAGTTAGAAATCAACGGCTCTCGAGCTTGGAGGATATGCAAACCCAAATCAAAGTTGAACCAAATGATTTTGACAATGCAGACAATATGAAAGAAGAACTTAAGACGACTATAAAACAGGAACCCATAGACAACACCAGTACAGAACCCATAGACAATAGAGCTGATATTAAGGCTCAAACTGAAAGTGAAAATGAACATGAAACAAGCAGTTTTCAAATTGACAACAGTTTATATCCTAGCCAGAGTGAGAGCAGTCGAAATGATAAAGAAAGTAAATGTGAAGTTGAAATTAGTGGTGGTTCGAATATTAAAAGTGAGCCTGAAGATTATGAAATTGACATTGTTTATAACCAAGGCATTGTAGCTATTAATGTAGAGCCTAGAGATATAAAAAAAGAAATACTAGAAATAACAGAAGCGAATAAAAACGTCGGTGATAAGGTTGTCCCTGTTAAAGCAAATTTACGTAAGAAAAAAGTAATTAACAAGAAAAAGCTAAAAAGAAACGCAAAATCTTTATTAAAACATGACGTCACCGAACTTAAAATTACAGCAAAGAACTCTAAATCTCTTTTGAAGAAAATCATAGTAAAAAAAGAAAACGTAGATATAAAAATGAATGATCTAAAAGCCGAGTGCAATTCAAAAACTACTGAAGTTAAATCGGGTTCGAAAAAGAAATTGTGCGGAGAGAACAAGGTTCGTAAAATTAAATCTTTGAAATTCGATGAAAACGGTGTTAAGATCAAACGTATGTACAAATGTGCAAAATGTGGGTATGAACAAAGTCACAAACTGTTCCGGATGCATCAAAAATCTTGTTGTGAATATTGTCCGTCGGAAGAAAGATTAAAGGATAAAAGATATGACTGTACCAAATGTGGTAGAAACTTTGATTCTCTTAAGTCTTACTTGGTTCATTTTACAAAGCATGGTTATGGAGTGCTGGATTGTCCATCTTGTAATATGAAATTTGAGATGTTGAAAGATTTGATACCGCATTTCCAACAACATGTGAAACAGAATTATGTTAATTGTTGGCTTATAAACGACGGAAAGGAAACTACTAAGAAACAGCATAGGTGTCAGTTATGCCGCTTGATCGTCCGGCCCCACGAGTTCTTTGTTCATTGGGAGACCCACTTCCAGCTCAGGGTGGAGAAGAATGAACCAGAGGAACTGGAGCTCAGTGACGTCACTGAAACTGTCTCCAATAAGAAGGAGCTGCCACCAACGGTACTGCATCTAGCGCTGCAGCAACTGCGGTCGGCGGCTCGCGAGAAGGTGTGCGTCGTGTGTTGTCGCAGGTTCGAGCGGCGTTTCGACATGAAGCGGCACCTGGTGGAGCACCTGCTCATGGACGCCTACACCAAGAAGGACAAACTGCGCGCTTTCACGCTCAGGTGTCAGATCTGCGTGAAGGAGTTCCAGCACAAGGAGCGCTACAAGTACCACATGCGCGAGCACGGCGGCATGCCCGACTACCACTGCGAGATCTGCAACAAGTCCTTCAGCGACTCCAGCAACTTTGCCAAGCACAAGAAGATACACAACATGGGGGTGGTGATTTGTGATATTTGCAAAAAGAAATTCCAAGCGAAGTATTCTTTGGAGAAGCATATGGTAATCCACCTGACAACTGAGCCGATTGAGTGCAATCACTGCGACCGCAAGTTCTACTCTAGATCGCTTTACAACAAACATATTTTGAACAACCGGCGCGGCGTGCACATGCGGTGCGTGCAGTGCGACCTCACGTTCTGTTCGTCGCGCGAGAAGTGGGACCACGCGTGGCACGTCCACAACAACCGCAAGCACAAGGCCGACTGCCCCATCTGCCACCAGGAGTTCAGAAAATACCAAGACGTGCGTAATCATGCGCGAGACGAGCACAAGATGGATTTATCCTTCTATATGATCAAATCGGAGGCCGGTGTCGTGAACAACGTCAAGTTCGTCCAAATAAAAAAACACAAGAAAAAAAAGTAA
- Protein Sequence
- MSNYKKKSRKSKHEVRDVDVEDTENTILQITFPEPQLETENVEPSQQENLLDPPPNLDHTYARPNRSFTSSSLTTPSSSGIHLSVKVEVEEFDESIFNEIPSSVSELVSKNDKHNPIHAFEVSLEKIFKISDHISCSTPNLADKILNIDIKNIWGRALKPNDEYEPYDDLIQQAFNKWNHSLTSGRLMQHGDTPLFYQCYICKLAWWYFTPFKEHIRTHNLNTMKIQYQEDGFESYIYACEGDIRNTMYIPLEGNCPRCEKPYSFHVKPTHGIYSCKECFLGLETCKLLKQHESECLVTYFVTKCENEMYNVNVKCTICTLKFHTDSELESHMITVHDVRSDIISPYVFKMCGVCKKKYHYFFTHMCVRSTLSSPCEFCFRRFHTKTLHKAHNFIQEKDYPCRICGAVLQSRCMETEHMLGHTDNYRIVYRCINHTCPPTILFLDMESVKRHWRLYHKKKTDCRRPCYDKAPSCGGVVWRVALFPNIWLRRAMAGTCVILVIGCCLRVAGLLVIVIPKQCVISDCVQILDRTGCIDGIRIEKVVSEEPEVEDWCVDNAPLEPMDTQPEIDDDVIMIKPEPQEPIVIDSQDDSMDSQMDYAEMLSKVFKVSDAVRNQRLSSLEDMQTQIKVEPNDFDNADNMKEELKTTIKQEPIDNTSTEPIDNRADIKAQTESENEHETSSFQIDNSLYPSQSESSRNDKESKCEVEISGGSNIKSEPEDYEIDIVYNQGIVAINVEPRDIKKEILEITEANKNVGDKVVPVKANLRKKKVINKKKLKRNAKSLLKHDVTELKITAKNSKSLLKKIIVKKENVDIKMNDLKAECNSKTTEVKSGSKKKLCGENKVRKIKSLKFDENGVKIKRMYKCAKCGYEQSHKLFRMHQKSCCEYCPSEERLKDKRYDCTKCGRNFDSLKSYLVHFTKHGYGVLDCPSCNMKFEMLKDLIPHFQQHVKQNYVNCWLINDGKETTKKQHRCQLCRLIVRPHEFFVHWETHFQLRVEKNEPEELELSDVTETVSNKKELPPTVLHLALQQLRSAAREKVCVVCCRRFERRFDMKRHLVEHLLMDAYTKKDKLRAFTLRCQICVKEFQHKERYKYHMREHGGMPDYHCEICNKSFSDSSNFAKHKKIHNMGVVICDICKKKFQAKYSLEKHMVIHLTTEPIECNHCDRKFYSRSLYNKHILNNRRGVHMRCVQCDLTFCSSREKWDHAWHVHNNRKHKADCPICHQEFRKYQDVRNHARDEHKMDLSFYMIKSEAGVVNNVKFVQIKKHKKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -