Lhir012698.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387376.1:46376152-46391914[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.4 1.2e+02 4.1 4.6 5 23 289 307 286 307 0.94 2 13 0.081 6.5 8.1 4.4 1 23 315 338 315 338 0.92 3 13 2.7 2.2e+02 3.2 0.1 1 23 342 364 342 364 0.88 4 13 0.0044 0.35 12.0 2.9 1 23 445 467 445 467 0.98 5 13 0.081 6.5 8.1 7.1 1 23 475 498 475 498 0.97 6 13 0.0048 0.39 11.9 0.9 1 23 502 524 502 524 0.98 7 13 0.0082 0.66 11.2 3.7 1 23 529 552 529 552 0.95 8 13 0.0033 0.27 12.4 0.6 2 23 557 579 556 579 0.90 9 13 0.5 41 5.6 0.1 1 20 600 619 600 621 0.94 10 13 4.1 3.3e+02 2.7 0.2 3 23 688 709 686 709 0.86 11 13 1e-05 0.00082 20.3 1.3 1 23 718 740 718 740 0.98 12 13 6.8e-05 0.0054 17.7 0.6 1 23 746 768 746 768 0.96 13 13 0.00013 0.01 16.9 4.8 1 23 774 797 774 797 0.98
Sequence Information
- Coding Sequence
- ATGTGGGATCTAAAGGCGTGTGTTGTGTGCTTAAGCACAAACATAAATCTCCACAGCTTAAACGTCGGAACTCTTAGAAATGATTTCAACTTGATTTCCGGACTGAAGATGAGACAAGGGAATGGAATGCCGGAGTACTTATGTGTGGAATGTACAGCTTATGTGGACAAATTTAAAAAGTTTAGAGACAAGTGCCATAGATCATACTATACATTGAGCCAAATACTTGCTAAGAATAAAGAGATTAAAGAGTCCAACTTGTCTCACATCAACCGTAAACAACTGAAAATAATGCCGACTTTGTCATTTATGAGTATGGATAGAAGTAACTATTCCCAATTCCAATTTGAGCTGGTTGATCACTGCCGTGATGGCATTTCACGGCCTGCCCACATTCCGATAGCCCATTGCAGTACACTGACATCTGAAGATACATTTGAATTAGAAATGAAAAATGTCGCTCAAATAGATTTACAGAAATCTATTAAGATAGAAATTGATCCGAACACAAATGGAATAGAATATCATGATAATATGAAAAAAGCACACAAACAAAATTGCATTAGATTAGACAAAGCAACAACAGTCAACTCTACAAATGATAATAATGTCGACCCCTCAAACTCTGCAACTGCTAAGGTGAATTTGTATGAGATGGATCAAAATGGTGACGATTTTCATAACAATGATTTTGAAGATGATTCAGATGATGATAACAAATTTGCACAAATTTCGTGTAAATTAGGCGATACGGCAGAGGTTAGATATAGTAATAAATGCGGAGACGTAGTGCCTATGACAGTTAAGGAAGCTAAAGCAGCGGTGGAAGTTTACAAGTATACCTCGCAAGGACCTTATCAGTGCCACTGTGGGAAAGCATTTGTGTTGGAGAAAAACTACAAGACACATTGTCGGAGACATGATTTGCACATCAGCGGCACCTATCACTGCGAGATATGTGACTACTATTTCAAGACTGCATTCCTACTCCAATGTCACATGTCCGACCAACACATGTACAAATATTTATGTAAGATATGCCCCGAAGTAAGTTTCAACAAGCCAGTAGCTAAACAGCACTACGCGTCCCATGTGAGGCTGGATCGGGAACCTACCCTCAAAGCCCATAATAGCGAACCAATCAAGAAACCTTCCTGGATAACACCTACTAACCGAGGCGGTGCACGGATAAAGGGTGTCTGCAAGGAAAAACCAAAGAGAGTAGTCAAGAAGTTGCCAAAAGACTTCCCGGTGTACAGTCCACAAAGCCAGCCAGAGCAGTACGAGATGGTCCAACAACGGAAGCTGACTAGAAACTATTTGGAAGCCAAATTCAAGTGTGAGCAGTGCTATAGGGGATATCGGTTAACTAGCACATTTACTAAACACATGGCTAAGCACGACTCGGCAGTATCGGGCGTCCATCAATGCGACATGTGCAAACATTACTTCCGCGACACGCGACGCCTCTACAAACACATGATGATGTACCATTTGTTCAAGTACTCGTGCCCCCTCTGCGATTACGTCACCACTCACAAAGGTCAAGCGGTATACCATTATAGGTGGCACAAAAATGTCACCTACGACTGCCCACACTGCGATAAGAAGTTTAACAAAATCACGACGCAAATGACGCACATAAGGTTCAAGCATCCCGGCACAGATGTCTGCAATATTTGTGGACACAGTTTCATCAGCTCCAGCGGTCTCCGATTCCATAAGCTAGTGTCGCATAGTAAACGGGAGATAGAGATAGGTGAGGCGATGGTGGTAAACCCGGATACCGCGAGCCCCTACCACTGCGCCGAGTGTCGAATGCAGTTCGTAACTGAAGAGGCTTACGTGACCCATCTCGGCAGCTCCAAGAAACACGTTGAAGTTAACGTCTCCTCACAATCGGTAATGAAAGGCAAAGCGAGATCGTTCCGTCGCGAGTCCGGCGTCAGTCCAAGGTCCCACGAGCCGGCTGCTGATATGATAACCAGGACGAAGAGCCGGCGCGGGCGGCGCCCTGGCGACACGGAAGTCCTTAACACCGGAATCTGCACTTCGACACACTGCACTGTTTGCGGTCAGTTCCTGGTGAGCGACGTAGAGGCGCGGCGGCACTACGAGGCGGAGCACCCCGGCACTGACTACCTCAAGCGGTACATGTGTGACGTCTGTGGACATACCACCAAGCAATTCGCGAATCTGTTAGTCCACATGCGCACGCACACACGCGAGAAGCCCTACCCGTGTCCGCACTGCGACCGCAGATTCAGTATGCCGAGCAACAGAGACCGGCATCTAGTCGTCCACACGGGAGAGAAGCGCTTCCAATGCCACCACTGCAGCCGACGGTTTACACAGAGCACGGCAGTCAAGCTGCACATACAGACCGTTCACTTGAAGATACCTTACAAGCCGTGGGACAAGAAGAACAGGAAGCGGCGCAAAGAGGCGCAACAGAACTCTATTGGTACGGAAGTGGTCGACCATCCAGAGCCGGTGCCGGTGGCGCTGACGGCGGTAGCGGCGGTGCCTCAGAACAAGCTGCTCCTCGACCCGCAGGGGGAGTACCTCACGTACATCTACACTAACGAACAATAA
- Protein Sequence
- MWDLKACVVCLSTNINLHSLNVGTLRNDFNLISGLKMRQGNGMPEYLCVECTAYVDKFKKFRDKCHRSYYTLSQILAKNKEIKESNLSHINRKQLKIMPTLSFMSMDRSNYSQFQFELVDHCRDGISRPAHIPIAHCSTLTSEDTFELEMKNVAQIDLQKSIKIEIDPNTNGIEYHDNMKKAHKQNCIRLDKATTVNSTNDNNVDPSNSATAKVNLYEMDQNGDDFHNNDFEDDSDDDNKFAQISCKLGDTAEVRYSNKCGDVVPMTVKEAKAAVEVYKYTSQGPYQCHCGKAFVLEKNYKTHCRRHDLHISGTYHCEICDYYFKTAFLLQCHMSDQHMYKYLCKICPEVSFNKPVAKQHYASHVRLDREPTLKAHNSEPIKKPSWITPTNRGGARIKGVCKEKPKRVVKKLPKDFPVYSPQSQPEQYEMVQQRKLTRNYLEAKFKCEQCYRGYRLTSTFTKHMAKHDSAVSGVHQCDMCKHYFRDTRRLYKHMMMYHLFKYSCPLCDYVTTHKGQAVYHYRWHKNVTYDCPHCDKKFNKITTQMTHIRFKHPGTDVCNICGHSFISSSGLRFHKLVSHSKREIEIGEAMVVNPDTASPYHCAECRMQFVTEEAYVTHLGSSKKHVEVNVSSQSVMKGKARSFRRESGVSPRSHEPAADMITRTKSRRGRRPGDTEVLNTGICTSTHCTVCGQFLVSDVEARRHYEAEHPGTDYLKRYMCDVCGHTTKQFANLLVHMRTHTREKPYPCPHCDRRFSMPSNRDRHLVVHTGEKRFQCHHCSRRFTQSTAVKLHIQTVHLKIPYKPWDKKNRKRRKEAQQNSIGTEVVDHPEPVPVALTAVAAVPQNKLLLDPQGEYLTYIYTNEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -