Basic Information

Insect: Lycia hirtaria
Gene Symbol: -
Assembly: GCA_947563715.1
Location: OX387380.1:43446011-43453194[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00069 0.055 14.6 1.5 1 23 517 540 517 540 0.96

2 8 0.31 25 6.2 0.1 2 23 546 567 545 567 0.94

3 8 0.00012 0.0093 17.0 4.4 1 23 573 595 573 595 0.97

4 8 0.00093 0.075 14.2 2.5 1 23 600 622 600 622 0.98

5 8 3.2e-05 0.0026 18.8 2.4 1 23 631 653 631 653 0.97

6 8 7.9e-06 0.00063 20.7 1.0 1 23 659 682 659 682 0.97

7 8 0.052 4.2 8.7 0.8 1 13 688 700 688 711 0.83

8 8 0.00066 0.053 14.6 2.1 1 23 719 742 719 742 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00069	0.055	14.6	1.5	1	23	517	540	517	540	0.96
2	8	0.31	25	6.2	0.1	2	23	546	567	545	567	0.94
3	8	0.00012	0.0093	17.0	4.4	1	23	573	595	573	595	0.97
4	8	0.00093	0.075	14.2	2.5	1	23	600	622	600	622	0.98
5	8	3.2e-05	0.0026	18.8	2.4	1	23	631	653	631	653	0.97
6	8	7.9e-06	0.00063	20.7	1.0	1	23	659	682	659	682	0.97
7	8	0.052	4.2	8.7	0.8	1	13	688	700	688	711	0.83
8	8	0.00066	0.053	14.6	2.1	1	23	719	742	719	742	0.96

Sequence Information

Coding Sequence: ATGATGAATAACAGTGGTACACAAGAGCGCAATGAAGCTCCACCTAACATCGGCACTTCCTTACACAGACCGCAAACTAACGCCAGTAATATTAACCATAACTTTAATGATTTTGGTAAATTCATGCAACAAACGGCTGCTACTGCTAGTGGATACTATGAAGGACACAATATCCATCATATTGGACAGCCTCCGGCAAATATACCACCATTGATACATCCATTCCAGGCATGCCAAAATATGGGTCATGGATCGCAAAACACTCAGTTTTCATATGAAAATGCAATGCATAACTATTTTCCACCAGTAAATAGTACTACACAAGCTGAACATCACAATATCATGTTGAACTTAAACCAACATTTCCATTCAAACCCAACTGAGTTACAAACTAATACAACTAAGAAAGAATTTTATCCATCCTCTAAGAGCTATCCTTTAAATATACCGCAAGTATCGTCAAGAATCTTTGAAAAGAGCTCTAGCATAAATAAGAATAATTCGAATCCTCAGAATCTATCTGAAAATGTATCTACAATATCACAAAGTATTCCTCAGACATCTACTAATATATCTCAAAATATCACCATCACTGAAGATACTGGTCTAAATACCCAAACAAAATCAAGTCCAAGTAGTAATATCCTTTTAGAAAATGTAACTGAAGAGCTTATAAATAACAAAGATCAGTACGACAATGAAACTCCAAGAAATCTAACCCAAAAATTAATAGAAAATACAGAAGCGTGTACAAAACCAACTGAAAATATAGATGTGACTCCAACAATCCAAAGAACAACATACAATATAGTAAAAAACAACTCAATTTTAAAAAGATGTTTAACAGAAAGTAAACGTAAAAGTCTCGAGAAAACAGTCCAGTTAATTGAAAGCATTATAATCAATTCAAACAATAGATCAGAAGTAATTGAAAACAACATAGACCCGTTAGCATTTTCACCTAACCCTGACTTAGGCAATACAAATATCAATAAAAACAGTAAAGAGGTTGCTACGGACAGTGATGATGAAGTCTTAATAAAGAAAGTTACAACAAAAAATAAAAGAAAATTAACGGCAAAGAGATTATCATCCAAAAAGAATAACAAGACACAAGACAGTCCTGTTGAGCTATCAATGGAAATGCCAAGTCAAATTGTAACAGTGAAAGTCGAGGATGTAAAGATTGAGCCATTCAGTTTGTCGGATGTTGAGCATGTTAGTCCATTTCATAGAGACTCTAATGGCTTACTGTCAAATGTTGATGGTGTGAAAATTATCAATATGGAGCATAGTGTGAATGAAGCTTTGATAATTATCAAGAATGGTTCAACAACAAATGCATACTTCGAATGCCCTCACTGCTCTCTTCTATTACATCACCCGAAAAGGTTCCTCATACACACAAAATGGCACACCTTTGGGCTGCTCAATGAAAAAAGGGCAGGGCTCGTGAAGGAAAGAGAGGAAAGATTAAAGGAGAGACGGGAAGCTAGACTTGTTCTTAAACTTACACCTCTCGCTCCGGGAGAAGCGTCGGTCTCGAAGTTTCCTTGTAAGGATTGCGAGAGCGTTTTTCCTACTAAAAATGGTCTCAAAAACCACAGGCACAAAGTACACCCAGTGAAGGTGTCGGAGTGCCGCATATGCCTGGCGCCAGTGCGCGGTATGAGCGAGCTGCGCGCGCACATGACGTCGCACGAGACCGCCGGCTTGCACCAGTGCCCGCGCTGCCCCAAGCGGTTCAAGTACAGGCACTCGCTCGCCAAGCACGCGGACACACACCGGGAGAAAACACACAGTTGTTCGGAATGCGGCAAGTTATTTGGATCTCACGCTCTCGTCCGCCTCCACATGAAAACGCATGAGCGGGCTGAACGCGGCGTCACGCACCACTGCGCTTACTGCGGGAAGGGCTTCTATGAGGCTTACAACCTGCAGGTGCACGAGAGAACCCACAGGAATGATAAGCCTTTCCAATGCAACATCTGCGAATCACGTTTCGTCACAAACTCTAGTCTCAAAAGGCACGTCAAAGTGTCCCACAGCGGCAGCAAGCCGTATATGTGTGAGATATGTAAGAAGTGTTTCGCGAGTGCTACCATCCGCGACCGGCACGAGCTGAGGGTGCACTCCGACCAGAACCAGTTCACCTACCAGTGCAAACTGTGCCCTAAACGATATATGAAACCGAAAGATCTCAGAAGCCACACATACAAAATGCATCCGAAAGAAAAGAAAAAGAATATTTCGAGTGACGCGGAGCAGAGTTCGTCGTAA
Protein Sequence: MMNNSGTQERNEAPPNIGTSLHRPQTNASNINHNFNDFGKFMQQTAATASGYYEGHNIHHIGQPPANIPPLIHPFQACQNMGHGSQNTQFSYENAMHNYFPPVNSTTQAEHHNIMLNLNQHFHSNPTELQTNTTKKEFYPSSKSYPLNIPQVSSRIFEKSSSINKNNSNPQNLSENVSTISQSIPQTSTNISQNITITEDTGLNTQTKSSPSSNILLENVTEELINNKDQYDNETPRNLTQKLIENTEACTKPTENIDVTPTIQRTTYNIVKNNSILKRCLTESKRKSLEKTVQLIESIIINSNNRSEVIENNIDPLAFSPNPDLGNTNINKNSKEVATDSDDEVLIKKVTTKNKRKLTAKRLSSKKNNKTQDSPVELSMEMPSQIVTVKVEDVKIEPFSLSDVEHVSPFHRDSNGLLSNVDGVKIINMEHSVNEALIIIKNGSTTNAYFECPHCSLLLHHPKRFLIHTKWHTFGLLNEKRAGLVKEREERLKERREARLVLKLTPLAPGEASVSKFPCKDCESVFPTKNGLKNHRHKVHPVKVSECRICLAPVRGMSELRAHMTSHETAGLHQCPRCPKRFKYRHSLAKHADTHREKTHSCSECGKLFGSHALVRLHMKTHERAERGVTHHCAYCGKGFYEAYNLQVHERTHRNDKPFQCNICESRFVTNSSLKRHVKVSHSGSKPYMCEICKKCFASATIRDRHELRVHSDQNQFTYQCKLCPKRYMKPKDLRSHTYKMHPKEKKKNISSDAEQSSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -