Lhir022859.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387387.1:3086358-3093893[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.38 31 5.9 1.4 1 23 261 284 261 284 0.91 2 10 0.003 0.24 12.6 1.0 2 23 312 334 311 334 0.95 3 10 0.0003 0.024 15.7 5.2 1 23 359 381 359 381 0.98 4 10 1.7 1.3e+02 3.9 2.6 2 19 386 398 385 408 0.72 5 10 0.00021 0.017 16.2 0.2 2 23 414 436 413 436 0.97 6 10 0.45 36 5.7 1.2 1 11 441 451 441 458 0.90 7 10 5.5e-05 0.0044 18.0 0.5 1 23 473 496 473 496 0.96 8 10 0.0012 0.1 13.8 0.8 1 23 502 524 502 524 0.97 9 10 0.0026 0.21 12.8 1.7 1 23 530 552 530 552 0.98 10 10 0.00017 0.013 16.5 0.3 1 23 558 581 558 581 0.97
Sequence Information
- Coding Sequence
- ATGCACTCTGAAATTAGAGGCAGCGTCTTGGACAGGTGCCGCTGTTGCTTTGAGGAAGGCATACGCCTACATGACTTCGAGTTAGTGCATGTGAAAATGTTCAAAAATTATTTGAACTTAATCCTAACGTGGGACTCTAGCGTCAAACAAGTGATATGTTCAGACTGTGTTGGCTTCCTGCAAGAGGCACAGAAGTTTAGGAAAGTGGTTATATCTTCACAGAGACGGCTGCTCCGTCTACACAGTGCTACAGTGTGTAATGACTCGAAAGAGGCAACTACCCAAGGTCACACTAGTGAAAATAGTACAGTGAAGATAGAGGTTGAAATCAGCAATAAAGCGATGCACCGAGTACATGATGACCTTCACACTGATGTAGCAGATCGCAAAGATGGAAGCACGGCAGAAATTGATGGAAACACTGAATTTAAAACAGAAATGGAATCAAGTCCAGAATATGTTCCTGATTGGGATAGATTTGAAGATATCAAATTCGATGTTAAAGATGAGATCGGCAATATGAAAACACCAAAAGTTGAAAGAAAAAGAAAGAAAAATGCTAAAATTCACGACAAGAAATGTGATTCTGACTCTGACACGCCTCTATCACAAATAATAAATAAAAAGTCTCGACAAAAAAAGAAAATAAAGAAAGAAACAAAGAGTTTAACGTCCTCAAGTAAAGAATCAAGGAAGCGCTCATTTCTAGACAACAAAAAAGTTCGCTCAAACATAATATTAATACTACAACATTCTACGATCCTGCCATTCAAAAACAACTTCAAGTGCTTCTATTGCGACAACCCATGTATACTTTTTAAAGAATTGAAACAACACGTAGAAGCTGTACACAACAATGTGTCGGAAACTGCTATAGCTAAGGTTGTAGGATCCTTGCAAAATTTAATGGTAACTGCAGATATAAGTCACATAAAATGTAAACTGTGCGAAGAAGAATTCAAATCTATAGAAAATTTGGTTGAACATTTGTGCAATACTCATAAAATGACATACCACAAGACGGATAAAAATCCCTCACATGGCATTTTGGGAGTTGATCTCAGCACTGATACTTTTAAGTGTCACATATGCTATAAAGATTTCACATTCTTCAAAAATTTATCTTCACACATGAACGAGCATTACGGATCTATTGTTTGCTCTGTGTGTGGTAAGAAGTTCTTATCCAAACACAGACATAAAAGCCATGTTTTCAGGGCTCATGCGGATAAAAAAACTAAGTGTAAATATTGCGGAATGATTTTCAACACTGAGCCAGCGTTGGCGTATCATGTTAGAAAAGAACATATAAAACCGGTGTTTAAGTGTCCCAAGTGCCCGGAGAAGTTTGTTTTTGGACAGTATGTGAAAAGGCTAAATCATATGGCGGAAGCACACGGTATACAAAAGCCTATATTTAAATGTGACACATGTGGCAGGAAATACGCGAATTCAGCTAGTTTAGCTGCTCATAAACAATACACACACAAACGGACAAAAGAACACAAATGCGAAATATGTGGATATGTTACGGTGTATAACACGGTGATGAAGAAACATATGGATGTGCACAATGGAGTAAAAAATTATGAATGTGAATTTTGTATGAGAAAATTCACCAAGCTGAACACATTGAGGGTACATTTGAAAATTCATTTGAACGACAAGAGGTTTATTTGTTCACTGTGTGATGCTGCTTTTATACAAAAGAATGGTTTGAAAAGTCATTTGAAATCTAGACATCCTGATTCTGGTATAGATATAAGTAATTTATAG
- Protein Sequence
- MHSEIRGSVLDRCRCCFEEGIRLHDFELVHVKMFKNYLNLILTWDSSVKQVICSDCVGFLQEAQKFRKVVISSQRRLLRLHSATVCNDSKEATTQGHTSENSTVKIEVEISNKAMHRVHDDLHTDVADRKDGSTAEIDGNTEFKTEMESSPEYVPDWDRFEDIKFDVKDEIGNMKTPKVERKRKKNAKIHDKKCDSDSDTPLSQIINKKSRQKKKIKKETKSLTSSSKESRKRSFLDNKKVRSNIILILQHSTILPFKNNFKCFYCDNPCILFKELKQHVEAVHNNVSETAIAKVVGSLQNLMVTADISHIKCKLCEEEFKSIENLVEHLCNTHKMTYHKTDKNPSHGILGVDLSTDTFKCHICYKDFTFFKNLSSHMNEHYGSIVCSVCGKKFLSKHRHKSHVFRAHADKKTKCKYCGMIFNTEPALAYHVRKEHIKPVFKCPKCPEKFVFGQYVKRLNHMAEAHGIQKPIFKCDTCGRKYANSASLAAHKQYTHKRTKEHKCEICGYVTVYNTVMKKHMDVHNGVKNYECEFCMRKFTKLNTLRVHLKIHLNDKRFICSLCDAAFIQKNGLKSHLKSRHPDSGIDISNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -