Basic Information

Insect: Lycia hirtaria
Gene Symbol: -
Assembly: GCA_947563715.1
Location: OX387387.1:11017724-11026259[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0038 0.3 12.3 3.1 1 23 340 362 340 362 0.99

2 10 0.031 2.5 9.4 0.8 1 23 395 417 395 417 0.97

3 10 0.05 4 8.7 1.0 1 23 422 445 422 445 0.94

4 10 0.0053 0.42 11.8 0.9 1 23 450 473 450 473 0.95

5 10 0.031 2.5 9.4 1.2 1 23 486 509 486 509 0.97

6 10 0.21 17 6.7 0.0 2 23 549 571 548 571 0.94

7 10 3.6e-05 0.0029 18.6 0.1 1 23 586 608 586 608 0.94

8 10 3e-05 0.0024 18.8 1.1 1 23 613 635 613 635 0.98

9 10 1.5e-06 0.00012 22.9 5.9 1 23 640 662 640 662 0.98

10 10 0.00023 0.019 16.1 2.4 1 23 668 691 668 691 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0038	0.3	12.3	3.1	1	23	340	362	340	362	0.99
2	10	0.031	2.5	9.4	0.8	1	23	395	417	395	417	0.97
3	10	0.05	4	8.7	1.0	1	23	422	445	422	445	0.94
4	10	0.0053	0.42	11.8	0.9	1	23	450	473	450	473	0.95
5	10	0.031	2.5	9.4	1.2	1	23	486	509	486	509	0.97
6	10	0.21	17	6.7	0.0	2	23	549	571	548	571	0.94
7	10	3.6e-05	0.0029	18.6	0.1	1	23	586	608	586	608	0.94
8	10	3e-05	0.0024	18.8	1.1	1	23	613	635	613	635	0.98
9	10	1.5e-06	0.00012	22.9	5.9	1	23	640	662	640	662	0.98
10	10	0.00023	0.019	16.1	2.4	1	23	668	691	668	691	0.97

Sequence Information

Coding Sequence: ATGCAGAAACTAACTAAATTTAATAAGCTTAAACAAGAAGATGATGCATCTAAAGTTAGTGAAAGTGTAATCAAACTAACAAATGTTTCAAATAATGAAAGTTTTAATATTGATACTGAAAATAAAGACTTGGAACTTGTATGCTTTAGTGATGATGATAATAAACATGATATAATAGCAATAGATGATGAAAATGAATACTCAAATGATGCTAGTCTCGGCAGTGATGATGACAGTGATGATGACTTACATTCAATAAAAAAAAGGAAAATGAAAAAAGAATTACTTGATGACATTTCTGATGAAGATTTAGATGATGATTATATATATAAAATGAATAAAAGAACAAAAAAAACTGGCATAGAAGACTACTCTATAGACAAATTAATATTAAAAGAAAGAAGCATAATCTCTAAATTGGAGAACATAAATGAGACTTTAGATTCAATATGTGAAAATTGGGAAGTCACATCTCTTCTTACAGATCTGAAAACTGTTGACACACAAACAAAAGAAGATGTTAAGAAGATGACACATACATTTTTAACTGAGAAAAATGCTTTGCATCCTGGTAGGTTATTATATGTGGAAAAGCTTAATGAGGTGGCTAAAATAAAATATCTAAATGCTGATATAGATATGCTGACCAAGAGTTGTGGCAATATTGTGCAAAATTATAAAATTGGATTGTATGGTCCTAAAGAAAGGTTAACATCATTATTGAAAAACTGGGGCAAACTAAAAACGGAGGGCGGCTTCGTATTTGACAAGACTATCATAATAAACAGGCTAAATATGATCTCTGATAAGATAATACAGCGACTGCTAAACTTAATGCACGGTAAAAAACGCCTCCACTCAGACGCAGCGAGAGTCCTCAAAATGATCCAGAAAAATCCAAAACAACTCTCTACTCAATTCGAATCAGTTTTCGACATAGAATATTTGTCGACAGAGAAGGACAAACTAGAGGAGTTCGAGAGACGTAAGACCTACGAGTGTTACGTGAAAGCTGAGTACAAATGTCAACTTTGTTATCAAGGGTTTAAGAGTGAAAAGTATTTGGAGTATCACAAAAAAATGCACGACGAAAAGCAAGGGCAGTTTTCATGTCATATTTGCTACGTGAGACATTACTCGAAAGAAGGTCATCGAAAGCATATGCTCCTTCACAAAGAAGTCTTCAAATGTAAGCTGTGCCCTCTAGTTACGTATTACAGAGATTCTATGATAAACCACTATGAACAGCACAAGGGAACTATTTACGAGTGCGGAAAATGTGGCAATAACTACAAGAGTAGGTCTGCGTTCATGTTCCATCAGAGCCGCGCGCACCCGCGCGGCGACCACGTCTGTTCCATCTGCGGGAATGCGTTCGTCTCCGAACAGGGGCTACATTCGCACGTGCTCAGGAAGCATCGGGGTGAATCGCCAGTCCCTGCAGATGGATCAGGTTTTAGTTGCGAGGAATGTACTCTCACCTTCCCTTCAGAAGAAGCCTGCTTAAGACATAGAAGAATAACTCACGGCGTGGCGAAGAGGAGACGCGGCGTAACGACTGTGGACAAAGGAACTAAGGAGACTAAACGGGGAGGAGTGCCTCGGCCCAGAAAGTTAACGAAACCGAGAAAGAAGCCTGTTATGACTTGTCCAGAGTGCAACGCAGTGGGTGAAAGTTACGGATGGCTGGTGAAACACTTCAATATCGAACACCCTTCATTGGACGTAACGACGGCCTACGGGAAAAAACAGGTCTACCTCTGCGATATATGTGGGAAAGAATTCGGGAACAAATACGGCCTCCGCGATCACATAGGCGTGCACACTGGACTTTCGTTCCCTTGCCCGACTTGTAACAAGCAGTTCGGCTCGCAACAAAAACTAAATCAGCATCGTCGTTGGCACGGCCCGCCCGGGTACTGCTGCGAGCGGTGCGGGAAGAAGTTCCATTCGGCCTCCAACTTGAATAATCATATGCGGACTCACATCGGAGAGCGCAGTTTCAAATGTCAAATCTGCGGAAAAGGATTTCTACACCGGTGCTCCTTAAATGCACACATACGAGGAGTCCACAATCACCAACGACGCAACAGAAAAAGAGGGGACACAAATGCATCACATGAAGCGACTGATACAGGGACGCTTACGATTACTGAGATAAGCGGGGAACCGCTACTTGAAACAAGGACTGGGGATATACTAAATTCGGAATAG
Protein Sequence: MQKLTKFNKLKQEDDASKVSESVIKLTNVSNNESFNIDTENKDLELVCFSDDDNKHDIIAIDDENEYSNDASLGSDDDSDDDLHSIKKRKMKKELLDDISDEDLDDDYIYKMNKRTKKTGIEDYSIDKLILKERSIISKLENINETLDSICENWEVTSLLTDLKTVDTQTKEDVKKMTHTFLTEKNALHPGRLLYVEKLNEVAKIKYLNADIDMLTKSCGNIVQNYKIGLYGPKERLTSLLKNWGKLKTEGGFVFDKTIIINRLNMISDKIIQRLLNLMHGKKRLHSDAARVLKMIQKNPKQLSTQFESVFDIEYLSTEKDKLEEFERRKTYECYVKAEYKCQLCYQGFKSEKYLEYHKKMHDEKQGQFSCHICYVRHYSKEGHRKHMLLHKEVFKCKLCPLVTYYRDSMINHYEQHKGTIYECGKCGNNYKSRSAFMFHQSRAHPRGDHVCSICGNAFVSEQGLHSHVLRKHRGESPVPADGSGFSCEECTLTFPSEEACLRHRRITHGVAKRRRGVTTVDKGTKETKRGGVPRPRKLTKPRKKPVMTCPECNAVGESYGWLVKHFNIEHPSLDVTTAYGKKQVYLCDICGKEFGNKYGLRDHIGVHTGLSFPCPTCNKQFGSQQKLNQHRRWHGPPGYCCERCGKKFHSASNLNNHMRTHIGERSFKCQICGKGFLHRCSLNAHIRGVHNHQRRNRKRGDTNASHEATDTGTLTITEISGEPLLETRTGDILNSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -